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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaacaatttatagcattttctctgccttatttctaattgttttcaaggttagtatgagttgcatattttttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGTCGAGACTTTGTAG

Basic information

species Zea mays
transcript GRMZM5G870572_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G870572_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g25060.1 (Oryza sativa), 3'ss of exon 3
---------------gtttgaacaatttatagc--attttctctgccttatttctaattgttttcaaggttagtatgagttgca-----tat---tttttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGTCGAGACTTTGTAG
                 || |||  | | | |   | ||||| | | | || |  | ||||||      ||   |  | ||| |     |||   ||||||  | ||| |||||||||||| ||||||||||||||||||  |||||| |||| || ||| ||||||||||
gtataggcaattctaccttaaactttatcttgttgaatttctattcatgatctacatttgtttctgtcattgagaaaaattgaaatttctatgtgttttttctttagGGTGGAGGCTACATGTTTGAGTTTGACAATGTTACTAACCGCGACCTATCTCGTGACTTTGTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211184536|gb|FL153191.1|FL153191
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|211184539|gb|FL153194.1|FL153194
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|211184530|gb|FL153185.1|FL153185
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|148959670|gb|EC905590.2|EC905590
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|211184534|gb|FL153189.1|FL153189
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|211184537|gb|FL153192.1|FL153192
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|211184535|gb|FL153190.1|FL153190
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|211184538|gb|FL153193.1|FL153193
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|89756532|gb|DY686536.1|DY686536
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|31356392|gb|CD440749.1|CD440749
EST:     TTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCTCTGT
genomic: TTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|211184531|gb|FL153186.1|FL153186
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
EST: gi|211184529|gb|FL153184.1|FL153184
EST:     AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAG                         GCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT
genomic: AAGTAGAGGGTAACAAAGCAGCATTATTGAACCTTTCAAAAGAAGACAAGgtttgaacaa ... tttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccttatttctaattgttttcaaggttagtatgagttgcatattttttttctcagGCTGGAGGCTACATATTTGAGTTTGACAATGTTGGTAACCGTGACCAATGTCGAGACTTTGTAG
       ttctaat  putative branch site (score: 2)
                                      catattttttttctc  putative PPT
     atttctaattgtttt  TA-rich tract