1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtcgcaagtgcttatgccagtattatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
species | Zea mays |
transcript | GRMZM5G868433_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|211173109|gb|FK956294.1|FK956294
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|94477419|gb|EB706377.1|EB706377
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|211173107|gb|FK956292.1|FK956292
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|211171435|gb|FK956283.1|FK956283
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|15590144|gb|BI674760.1|BI674760
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|211173119|gb|FK956304.1|FK956304
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|211171440|gb|FK956288.1|FK956288
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|211173115|gb|FK956300.1|FK956300
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|20301133|gb|BQ164076.1|BQ164076
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGCCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG TATCAATGCCATGCACCCTAEST: gi|20299953|gb|BQ162896.1|BQ162896
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTA
EST: TTCTATGTCAGCCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|211173112|gb|FK956297.1|FK956297
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|9733002|gb|BE511754.1|BE511754
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTEST: gi|15313739|gb|BI478933.1|BI478933
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
ttatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
ttttaat putative branch site (score: 381)
aatttgtatgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcgcaagtgcttatgccagtattatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT