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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcgcaagtgcttatgccagtattatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG

Basic information

species Zea mays
transcript GRMZM5G868433_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
gtgagtcgcaagtgcttatgccagtattatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaacta--cagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
       |  ||    ||| ||  ||     || |    | | | |    ||     ||   | |||  |      ||   ||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||
-------gtgagaaactataccgctacggcttaaaattgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g51630.3 (Oryza sativa), 3'ss of exon 2
------------gtgagtcgcaa-gtgcttatgccagt-attatgtagaggaat----ttgtatgattatgcttgt-ttttaattccgttgaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
             | ||| | |  ||  | ||| || | | |||  |     ||    ||||||| | |||||  | ||  || || |||||  ||  ||||||||||||||||| || |||||||||||||| ||||||||  ||||||||||||||
gtaaggaaccacttaagttgtattgttataatgtcactgactatagatgatgatctggttgtatgttgatgctaatgttacaaatctgttga--ctgtagTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTGAGGCAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G18170.2 (Glycine max), 3'ss of exon 3
-----------------------------gtgagtcgcaagtgcttatgccagtattatgtagaggaatttgtatgattatgcttgttttt------aattccgtt---gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
                               |  |   ||    | ||| ||  ||  |         | | | || ||||  ||||||||      |||  ||||   | |||  |||||||||||||||| |||| || || ||||||||  ||||||||||||||||||| |||
gtaattaatcaataaatatattaattatttagtattttaatatatcatgacatcatattagtatattgtctttttggttattgttgtttttcttgctaatggcgtttctgtaacgtcagTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G06860.1 (Glycine max), 3'ss of exon 3
--------gtgagtcgcaagtgc-ttatgccagtattatgtagaggaatttgtatgattatgcttgtttttaattccg--ttgaaacta--------cagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
         | | |    | ||  | ||  || |||  |         | | | || ||||  ||||||||| | |    | |||  ||        |||||||||||||||| ||||||| || ||||||||  ||||||||||||||||||| |||
gtaattaattaatttattaatgtatcataacattatgctagtatattgtctttttggttattgttgtttttattgctaaatggaatttatgtaatgtcagTATCAATGCCATGGATCCTAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv00s2761g00010.t01 (Vitis vinifera), 3'ss of exon 1
--------gtgagtcgcaagtgcttatgccagtat-tatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaacta-cagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
         ||      |  |  ||       ||  | |        |||  |||  |  | ||  ||        |  || ||||  |||||||||||| ||||| || ||||| || ||||| ||||||||  |||||||||| |||
gtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcccgtccactctggaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTTGAGACAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 2
--------gtgagtcgcaagtgcttatgccagtat-tatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaacta-cagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
         ||      |  |  ||       ||  | |        |||  |||  |  | ||  ||  |  |  |  || ||||  |||||||||||| ||||| || ||||| || ||||| ||||||||  |||||||||| |||
gtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgttcactctggaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTTGAGACAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtcgcaagtgcttatgccagtattatgtagaggaatttgtatgattatgc-ttgtttttaattccgttgaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
||  |||        |  |      || |  |||     |  || |||    |  ||| || |||||  |   |   |  || |||||||| ||||| || |||||||||||||| ||||||||||| || ||||| |||
gtatgtcatttacaatgttctttcaataaattagcttgttgcgtgtgaaggagtgttgattataattatg--aatcttttagGATCAATGCTATGCACCCGAAGACCAGGAAGATTTTGCAGCTTCTACGATTGAGACAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ20182 (Selaginella moellendorffii), 3'ss of exon 2
gtgagtcgcaagtgcttatgccagtattatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
       |  |||| || | |       || |  ||   | ||||  |        || ||   ||  |||   |   ||||||||| | ||||||||| |||||| ||||||| ||||||||||| ||  || | |||
-------gtgagtggtttttctttctcgattttaag---tctgtacaaacgga---gtattatcttttgttttcatc-cagTATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAG

upper sequence: GRMZM5G868433_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ23123 (Selaginella moellendorffii), 3'ss of exon 2
gtgagtcgcaagtgcttatgccagtattatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
       |   |||  | | ||      || |  ||   |  |||  |     |    | | ||||  |||   |   ||||||||| | ||||||||| |||||| ||||||| ||||||||||| ||  || | |||
-------gtgggtgaattttccttctcgattttaag---tccgtacaa----acggagtataaattttgttttcatc-cagTATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4753534|gb|AI657444.1|AI657444
EST:     TCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|15632349|gb|BI679442.1|BI679442
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|14701065|gb|BI233483.1|BI233483
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|32932701|gb|CF037513.1|CF037513
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|24764818|gb|CA399980.1|CA399980
EST:     TATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|211171434|gb|FK956282.1|FK956282
EST:     TTCTATGTCAGCCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|5915128|gb|AW052769.1|AW052769
EST:     TTCTATGTCAGTCCCGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|211318387|gb|FL341244.1|FL341244
EST:     TTCTATGKCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|76922808|gb|DV169184.1|DV169184
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|15554187|gb|BI644185.1|BI644185
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|9733002|gb|BE511754.1|BE511754
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|60350172|gb|DN217145.1|DN217145
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|211173119|gb|FK956304.1|FK956304
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|5846778|gb|AI999861.1|AI999861
EST:     TCCGCATCCGTGG                         TATCAATGCCATGCNCCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTT
genomic: TCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|15590144|gb|BI674760.1|BI674760
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|148940442|gb|EC885240.2|EC885240
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|211173115|gb|FK956300.1|FK956300
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|94477419|gb|EB706377.1|EB706377
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|211192857|gb|FL432748.1|FL432748
EST:     CTGA-GCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: CTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|148941047|gb|EC885904.2|EC885904
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|5922428|gb|AW055717.1|AW055717
EST:     TCCGCATCCGTGG                         TATCAATGCCATGCNCCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|5915120|gb|AW052761.1|AW052761
EST:     TTCTATGTCAGTCCCGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|9733001|gb|BE511753.1|BE511753
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|20299953|gb|BQ162896.1|BQ162896
EST:     TTCTATGTCAGCCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|60338800|gb|DN205773.1|DN205773
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|148935172|gb|EC879210.2|EC879210
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|71438751|gb|DR819801.1|DR819801
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|60344948|gb|DN211921.1|DN211921
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|21987690|gb|BQ779218.1|BQ779218
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|71444618|gb|DR825668.1|DR825668
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCTATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|15313112|gb|BI478567.1|BI478567
EST:     TCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|20301133|gb|BQ164076.1|BQ164076
EST:     TTCTATGTCAGCCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTA
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTA
EST: gi|31350410|gb|CD434767.1|CD434767
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|60340627|gb|DN207600.1|DN207600
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|78084905|gb|DV513298.1|DV513298
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|32917266|gb|CF022078.1|CF022078
EST:     GATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: GATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|5296239|gb|AI782919.1|AI782919
EST:     CTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTT
genomic: CTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|6021537|gb|AW066465.1|AW066465
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|32866949|gb|CF006631.1|CF006631
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGG                         TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
EST: gi|15313739|gb|BI478933.1|BI478933
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGGTCCGCATCCGTGG                         TATCAATGCCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT
genomic: TTCTATGTCAGTCCTGAGGCAAAGCTGCTATTTGTGATCCGCATCCGTGGgtgagtcgca ... gaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG
                                ttttaat  putative branch site (score: 3)
           aatttgtatgattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtcgcaagtgcttatgccagtattatgtagaggaatttgtatgattatgcttgtttttaattccgttgaaactacagTATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT