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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggggaagaacaatcaacctccttcggtttgagcaatcttgaaccggatgttgagaattgcctccaaaccttgagcagcggatatctatatctccctggtccttgatatattgcttgtttctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATG

Basic information

species Zea mays
transcript GRMZM5G866954_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G866954_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g64700.2 (Oryza sativa), 3'ss of exon 3
gtaag--gggaagaacaatcaacctccttcggtttgagcaatcttgaaccggatgttgagaattgcctccaaaccttgagcagcggatatctatatct-ccctggtccttgata---tattgcttgtttctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATG
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gtaaataagaaagattagttctcacccttcagttttataaattttaaatcaaagttgttgagtgaggttctaagtatgagcagtggctatcttttttcatgcttgagcttgatagattattgtttgtgtttttt-cagCCTGGTCCTCGAGATGGTA------TGATTCAATGTTATATAAAGAGGAATAGATCAAAATCCACCTACCATCTCTATCTGTGCCTTAGCAACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149087044|gb|EE176585.2|EE176585
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
EST: gi|149096527|gb|EE182274.2|EE182274
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
EST: gi|148940025|gb|EC884765.2|EC884765
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
EST: gi|76015170|gb|DT942340.1|DT942340
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
EST: gi|149077240|gb|EE165910.2|EE165910
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
EST: gi|91052940|gb|EB163358.1|EB163358
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTT
EST: gi|148966465|gb|EE017475.2|EE017475
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
EST: gi|148991448|gb|EE032953.2|EE032953
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
EST: gi|148944361|gb|EC889462.2|EC889462
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
EST: gi|76018831|gb|DT946001.1|DT946001
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
EST: gi|71304052|gb|DR788147.1|DR788147
EST:     TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAG                         CCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT
genomic: TGAGCCCGGAGTTTTGTGGCAAGCTCACCTTCCCTGTGTCTCTAAAACAGgtaaggggaa ... tctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagcggatatctatatctccctggtccttgatatattgcttgtttctttgacagCCTGGTCCTCGAGATGGAAATACAATGGTCCAGTGTTTTATAAAGAGGAATAAGTCAAAATCCACTTACCATCTCTACCTGTGCCTTAGCAATG
                          ccttgat  putative branch site (score: 5)
                                    ttgcttgtttcttt  putative PPT
       atatctatat  TA-rich tract