1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcttccatttttgccattgctgcatgcaacttttaagagtttgatctttgaagaatctggtgcagcagtgcaaagatttcacaatcatgccttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCTTCAACTGCACAAAAGAAAAAGATAG
species | Zea mays |
transcript | GRMZM5G862959_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|4753396|gb|AI657306.1|AI657306
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211337492|gb|FL098066.1|FL098066
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: TTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|88753184|gb|DY537325.1|DY537325
genomic: TTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTG-AGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCCCGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGAEST: gi|148974314|gb|EE025087.2|EE025087
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGA
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|29944945|gb|CB815389.1|CB815389
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211484295|gb|FL254345.1|FL254345
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTAYTAGATGGTTTGTTGCAATCTGGAEST: gi|31358058|gb|CD442415.1|CD442415
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGA
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTCGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211484293|gb|FL254343.1|FL254343
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211337495|gb|FL098069.1|FL098069
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAAATCTGGAGEST: gi|211484294|gb|FL254344.1|FL254344
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAA-TCTGGAG
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211487166|gb|FL254349.1|FL254349
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: ACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|50326336|gb|CO521462.1|CO521462
genomic: ACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211337493|gb|FL098067.1|FL098067
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTACTAGATGGTTTGTTGCEST: gi|211484292|gb|FL254342.1|FL254342
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211384387|gb|FL373404.1|FL373404
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211484291|gb|FL254341.1|FL254341
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|32914541|gb|CF019353.1|CF019353
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211337491|gb|FL098065.1|FL098065
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|28873324|gb|CB329328.1|CB329328
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211484296|gb|FL254346.1|FL254346
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211043059|gb|FL422974.1|FL422974
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|93012241|gb|EB637761.1|EB637761
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCEST: gi|211337490|gb|FL098064.1|FL098064
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGC
EST: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAG TGCCTCAAATGCTTTGATTGGAT
genomic: CTTCGTGGTTTATATGCACGTGCAAAGGAGCTCTCTGAGAATGAAATCAGgtaaatatat ... cttcttgcagTGCCTCAAATGCTTTGATTGGAT
ctttgaagaatctggtgcagcagtgcaaagatttcacaatcatgccttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCTTCAACTGCACAAAAGAAAAAGATAG
tgccttctt CT-rich tract
aaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttccatttttgccattgctgcatgcaacttttaagagtttgatctttgaagaatctggtgcagcagtgcaaagatttcacaatcatgccttcttgcagTGCCTCAAATGCTTTGATTGGATTATTAGATGGTTTGTTGCAATCTGGAGCTTCAACTGCACAAAAGAAAAAGATAG
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