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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttcttgatcttttcacagaagtttcttatattctacgtttaattggcaagcatgagctgcctttcatatatttaccatattttatgtttgatgctttgctctagctgagctttacaattccttatttgataaacttttgtttgatcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTAGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAATCGCAAGGCAA

Basic information

species Zea mays
transcript GRMZM5G862107_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862107_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g20100.1 (Oryza sativa), 3'ss of exon 3
gttagttcttgatcttttcacagaagtttcttatattctacgtttaattggcaagcatgagctgcctttcatatatttaccatattttatgtttgatgctttgctctagc-tgagcttta-caattccttatttgataaacttttgtttgatcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTAGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAATCGCAAGGCAA
                                                                |    ||| |  |     | |   ||| ||  | ||       |   | | |  || |    |  ||||| | ||||   |  |||| |||||||||||| |||| || ||||| |||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
-------------------------------------------------------------taactgaacatttgatcctagtttccaatgcttagttctcaatcacattgtaaacactagctgcccactattttacaaaccacttcttgaccttgatcagAAATCAACTGCTGAAGAACTGCTTGACAAAGAACTACCTCTGAAGTTTGTGGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAACCGCAAGGCAA

upper sequence: GRMZM5G862107_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA17G04190.1 (Glycine max), 3'ss of exon 3
gttagttcttgatcttttcacagaagtttcttatattctacgtttaattggcaagcatgagctgcctttcatatatttacca-tattttatgtttgatgctttgctctagctgagctttacaattccttatttgataaacttttgtttgatcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTAGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAATCGCAAGGCAA
                                                           |  |     |   | ||||||||  ||   ||||   | | | |    || ||    | |   ||||    |   ||  | |  ||     |  |  ||||||  |||  |  |||||||| ||||| || ||  | ||||| |||||||| ||||| ||||||||||||   || ||||||||||| || ||||||||  
-------------------------------------------------------tgcaaattattagtgtgacatttaccagcataccatgtaaca-gttctaaaatatct----tcttttattctcattgaaattgagtcatgcaattttcttctcagAACTCAAATGTAGAAGAGCTTCTTGATAAGGAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGCAACCGCAAGGCCG

upper sequence: GRMZM5G862107_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT5G30510.1 (Arabidopsis thaliana), 3'ss of exon 3
gttagttcttgatcttttcacagaagtttcttatattctacgtttaattggcaagcatgagctgcctttcatatatttaccatattttatgtttgatgctttgctctagctgagctttacaattccttatttgataaacttttgtttg-atcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTAGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAATCGCAAGGCAA
                                           ||| | |        || |||        ||||||      |||  |  |||||  |  |    | |  | | | | |      |||   ||    |||  | |  || ||  ||||||| || | || |||||||| ||||| |||||| | ||||| |||||||| ||||| ||||||||||||   | |||||||||||| || || || ||  
------------------------------------------gttagtagttgcctcagaactgt-----gaatatttcaaggttttgttagttgattttaagacgaaacacaacctgata----tatatgaaatgtgttttcttctacatttttgtcagAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAAGTTTGTGGAGGTTGATGAGGAACAAACAAAGCTTGTCCTCAGCAACCGTAAAGCTG

upper sequence: GRMZM5G862107_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv05s0077g00450.t01 (Vitis vinifera), 3'ss of exon 3
gttagttcttgatcttttcacagaagtttcttatattctacgtttaattggcaagcatgagctgcctttcatatatttaccatattttatgtttgatgctttgctctagctgagctttacaattcctta-tttgataaacttttgtttgatcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTAGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAATCGCAAGGCAA
                                                         ||  | |    | || | ||||| |  | ||| | ||  |       | |  |  |   || ||| |||| | |||| ||   | |  |      || ||||||||||||| || |||||||| ||||| |||||| | ||  |||||||||| ||||| |||||||||||    |||||||| ||||| || |||||||| |
---------------------------------------------------------tgcac-gatacttatgtttttacaaattcttaagattattcaagaaattt--ccaaatattgcaaatcctgaatttgttattatatcctcatggatttatcagAAAACAACTGCTGAAGAGCTTCTTGATAAAGAACTTCCCGTGAAGTTTGTGGAGGTTGATGAGGAACAGTCTAGGCTTGTTCTCAGCAACCGCAAGGCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74236428|gb|DT644342.1|DT644342
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACTACCGCCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTG
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCC-GAAGAGCTGCTTGAGAAAGAATTGCCTCTG
EST: gi|148948413|gb|EC893930.2|EC893930
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|116813883|gb|EC856377.1|EC856377
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGGAAGTTTGT
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCT-GAAGTTTGT
EST: gi|148967255|gb|EE018456.2|EE018456
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|148950615|gb|EC896198.2|EC896198
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|71327391|gb|DR800308.1|DR800308
EST:     CTCTTGTGGATGGGCTTAAGGTTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|148973408|gb|EE024500.2|EE024500
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|89758470|gb|DY687641.1|DY687641
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|148969033|gb|EE019745.2|EE019745
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|211456074|gb|FL267263.1|FL267263
EST:     TTTGTG-ATGGGCTTTAGGGGTTTCNGT-CCATTTTCGCGAGTGTCATCG                         AAAACAACCGCCCGA-GAGCTGCTTGAGAAAGATTTGCCTCTGAAGTTTGT
genomic: TT-GTGGATGGGCTTAAGGG-TTTC-GTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCC-GAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGT
EST: gi|149085338|gb|EE174844.2|EE174844
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGNAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|88756836|gb|DY540977.1|DY540977
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCCTTTTCGCCAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGA
EST: gi|148968012|gb|EE019338.2|EE019338
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|76918968|gb|DV167535.1|DV167535
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|74240696|gb|DT648610.1|DT648610
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|76915754|gb|DV166106.1|DV166106
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACCACCCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGT
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACC-GCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGT
EST: gi|31364617|gb|CD448972.1|CD448972
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAAGTT-GT
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAA-GTTTGT
EST: gi|148972941|gb|EE023966.2|EE023966
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACACCCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|76280589|gb|DV020157.1|DV020157
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|15100289|gb|BI396080.1|BI396080
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|149110692|gb|EE190555.2|EE190555
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|148954074|gb|EC899473.2|EC899473
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTG
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTG
EST: gi|13558412|gb|BG549768.1|BG549768
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCTAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|31354547|gb|CD438904.1|CD438904
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|148962590|gb|EE013473.2|EE013473
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|71769111|gb|DR967048.1|DR967048
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|148997921|gb|EE035909.2|EE035909
EST:     TCTTGTGGATGGGCTTAAGGGTTTCGTTCCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: TCTTGTGGATGGGCTTAAGGGTTTCGTTCC-ATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|74241825|gb|DT649739.1|DT649739
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|149080306|gb|EE169331.2|EE169331
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|76932725|gb|DV173133.1|DV173133
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGACGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|13237206|gb|BG355220.1|BG355220
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|50327594|gb|CO522720.1|CO522720
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTA
EST: gi|148987624|gb|EE031498.2|EE031498
EST:     CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG                         AAAACAACCGCCGAAGAGCTGCTTGAGAAAGA-TTGCCTCTGAAGTTTGT
genomic: CTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 101

GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTAGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAATCGCAAGGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 421

GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTAGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAATCGCAAGGCAA


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 37

GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTAGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAATCGCAAGGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 139

GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCGgttagttctt ... tcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTAGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAATCGCAAGGCAA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctagctgagctttacaattccttatttgataaacttttgtttgatcttgatcagAAAACAACCGCCGAAGAGCTGCTTGAGAAAGAATTGCCTCTGAAGTTTGTAGAGGTCGATGAGGAACAAGGCAGGCTTGTCCTCAGTAATCGCAAGGCAA
                                       gtttgat  putative branch site (score: 139)
                      ttatttgataaacttt  TA-rich tract