1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttttattgtctttacctactgaaagagaagtgaaagttttatgtatcatactttgactactagtggttcattaagaacatgttttctcatttttgcagCTTAAATCGTTGGGTTTTTCATATGATTGGGATCGTGAAATCTCCACGACAGAGCCGGGTTATTATAAATGGACACAATGGATTTTCCTTCAACTGTTAA
species | Zea mays |
transcript | GRMZM5G858471_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCACCCTAAGATTACCACTGAAAGAAACATTGAGCGCTTTCGCACACAG CTTAAATCGTTGGGTTTTTCATATGATTGGGATCGTGAAATCTCCACGACAEST: gi|211051372|gb|FL057241.1|FL057241
genomic: CCCACCCTAAGATTACCACTGAAAGAAACATTGAGCGCTTTCGCACACAGgtaatatgct ... atttttgcagCTTAAATCGTTGGGTTTTTCATATGATTGGGATCGTGAAATCTCCACGACA
EST: CCCACCCTAAGATTACCACTGAAAGAAACATTGAGCGCTTTCGCACACAG CTTAAATCGTTGGGTTTTTCATATGATTGGNATCGTGAAATCTCCACGACA
genomic: CCCACCCTAAGATTACCACTGAAAGAAACATTGAGCGCTTTCGCACACAGgtaatatgct ... atttttgcagCTTAAATCGTTGGGTTTTTCATATGATTGGGATCGTGAAATCTCCACGACA
tatcatactttgactactagtggttcattaagaacatgttttctcatttttgcagCTTAAATCGTTGGGTTTTTCATATGATTGGGATCGTGAAATCTCCACGACAGAGCCGGGTTATTATAAATGGACACAATGGATTTTCCTTCAACTGTTAA
ctttgac putative branch site (score: 20)
tgttttctcattttt putative PPT
ttcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttttattgtctttacctactgaaagagaagtgaaagttttatgtatcatactttgactactagtggttcattaagaacatgttttctcatttttgcagCTTAAATCGTTGGGTTTTTCATATGATTGGGATCGTGAAATCTCCACGACAGAGCCGGGTTATTATAAATGGACACAATGGATTTTCCTTCAACTGTTAA
- - - - - - - - cctactg
- - - - - - - - - - - -aaagagaa
- - - - - - - - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaca