1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttttgaagtagcatgcaagttttgcaactgtcactgccttatctgtatagttaaagcagtgaagcatgtttaaagttgtcttgtcttgttaatcatcagGTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGAAGCAGTGACAAGCATTGGGAGGACCATTGGAATCAGGAATGAAAACATA
species | Zea mays |
transcript | GRMZM5G855347_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTGCTATATCAGATATTTTACGAGAAGATGCAAACTTAACTGTGGAGAG GTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGAEST: gi|166429613|gb|EG299227.1|EG299227
genomic: ATTGCTATATCAGATATTTTACGAGAAGATGCAAACTTAACTGTGGAGAGgtaatttctg ... taatcatcagGTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGA
EST: TTGCTATATCAGATATTTTACGAGAAGATGCAAACTTAACTGTGGAGAG GTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGEST: gi|5847391|gb|AW000470.1|AW000470
genomic: TTGCTATATCAGATATTTTACGAGAAGATGCAAACTTAACTGTGGAGAGgtaatttctg ... taatcatcagGTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAG
EST: ATTGCTATATCAGATATTTTCCGAGAAGATGCAAACTTAACTGTGGAGAG GTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGAEST: gi|60336693|gb|DN203666.1|DN203666
genomic: ATTGCTATATCAGATATTTTACGAGAAGATGCAAACTTAACTGTGGAGAGgtaatttctg ... taatcatcagGTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGA
EST: ATTGCTATATCAGATATTTTACGAGAAGATGCAAACTTAACTGTGGAGAG GTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGAEST: gi|60358034|gb|DN225007.1|DN225007
genomic: ATTGCTATATCAGATATTTTACGAGAAGATGCAAACTTAACTGTGGAGAGgtaatttctg ... taatcatcagGTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGA
EST: ATTGCTATATCAGATATTTTACGAGAAGATGCAAACTTAACTGTGGAGAG GTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGA
genomic: ATTGCTATATCAGATATTTTACGAGAAGATGCAAACTTAACTGTGGAGAGgtaatttctg ... taatcatcagGTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGA
gtatagttaaagcagtgaagcatgtttaaagttgtcttgtcttgttaatcatcagGTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGAAGCAGTGACAAGCATTGGGAGGACCATTGGAATCAGGAATGAAAACATA
tgttaat putative branch site (score: 3)
tcttgtt CT-rich tract
atgtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgaagtagcatgcaagttttgcaactgtcactgccttatctgtatagttaaagcagtgaagcatgtttaaagttgtcttgtcttgttaatcatcagGTTGCAGCAGGAAAGCATTACAACGTTCCTGCTGTCAGGGGATAGGGGAGAAGCAGTGACAAGCATTGGGAGGACCATTGGAATCAGGAATGAAAACATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA