Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC

Basic information

species Zea mays
transcript GRMZM5G851698_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 3
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
       |  |    |      ||| |||   | |    || || | |  |  |  | |  | |     |       | ||||||  ||||| || ||||| |||||||||||||||||||| || |||||||| || || ||||| |||||||| ||||| || ||| |||| |||||||||||||| |
------gtaatatcgtgaggcctct-gatgtttcctaattactgtt-acctagtcttaagatgttaacatatctctctcctttttctcagGAATTCAAGGGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA18G26190.1 (Glycine max), 3'ss of exon 2
gtaaattttctgctttcttatttcttgatccatgccccctatt---gctgatttcatacttaattataggtgtgatgtgtttcttttttgc----agGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
|||   | | |   | || |  | |  || ||| | | | |||   ||||| ||  || |  |||||   |      |  | || ||||||    |||| |||||||| ||||||||||| || |  || || |||||||||||||| ||||| ||||| || ||||| || ||| |||||||||| || ||| |||
gtatgctctttagctgctaacct-taaatgcatcctctcaatttttgctgaatttttaat-gattatctattcaccttcatgctcttttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
gtaaattttctgctttcttatttct-tgatcca-tgccccct-------attgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
|||   |||  |||    |  |||     | || ||   |||       |||| | | |   |   | ||| |   | |  ||| |||  |  |||||||| || || |||||||||||||| || |  || || || ||||| ||||| || |||||||||||||||||  ||||  |||||||||| |||||  |||
gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgt-tttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA16G09330.1 (Glycine max), 3'ss of exon 1
--------------gtaaattttctgctttcttatttcttgatccat-gccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
                |||   |     | ||| ||||   |||  | |      |||| | |||    |  |  | |    |   ||   | |  |  |   |||| ||||| || ||||||||||| ||||  ||||| |||||||||||||| || ||||||||||| ||||| || ||  ||||  |||| |  ||| |||
gtatgctctgtagatcaaaaccttcaaatacttgtttcaatatcttttgaggagcattgataattattgatcttgtcaactttaaaat---tatgctactaatagGAATTTAAAGGATATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTAACACCTGGCTGTGTTCATCTTTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 3
--------gtaaattttctgctttcttatttcttgatccatgccccctatt---gctgatttcatacttaat----tataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
        || |  |       || |||| ||    ||  |    ||||||   | ||      || |||||    |||     |       ||   |  || |||||||||| || ||||| ||||| ||||  ||||| |||||||||||||| |||||||||||||| |||||  ||||  |||||||||| || ||  |||
gtatgtttgttagctggaaatcttattatatcaatgtcagttgttcctattttaggtggagctttaattaatgatctattaacctatataactttgctactgaagGAGTTTAAAGGATATGTTTTCAAAATCACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 2
--------gtaaattttctgctttcttatttcttgatccatgccccctattgctg----atttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
        || |  |       || |||| |||   ||  | ||   | ||  ||    |||    | | |  |||     |       ||      || |||||||||| || ||||| ||||| ||||  ||||| |||||||||||||| ||||| |||||||| ||||| |||||  |||||||||| || ||| |||
gtatgctcgttagctggaaatcttattatatctgtgtctgttcctattttttgtggagcattaagaaatgatctattaacctctataactttgccactgaagGAGTTTAAAGGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 3
gtaaattttctgctttcttatttct--tgatccatgccccctattgctgatttcatact---taattataggtgtg-atgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
|||   | | |   | || |  |    ||   | |      |  |||||| || ||| |   ||  |||     |  |||  | | ||     ||||| |||||||| ||||||||||| || |  || || |||||||||||||| || ||||||||||| ||||| |||||| ||||||||||  | ||| |||
gtatgctctttagctgctaaccttaaatgtctcctctgaatttctgctgaatttataatgattatctattcaccttcatgactctgttgccaacagGAATTTAAGGGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttca---tacttaattataggtgtgatgtgtttc---ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
|| || ||| | ||  ||  ||   || |   | |       |  ||| ||||   |||||||  | |  |||| |||||||     | ||||||||| || ||||| || || |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||| | || |||||||| ||| |||
gtgaaattttttctc-ctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaac-agaattgtg-tgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaattttctgctttcttatttcttgatcca-tgccccctattgctg--atttcatacttaattata--ggtgtg---atgtgtttctttt-ttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
||| |  |||   |||  | |   |||||| | ||      |    |   |||||  |    || ||   | | ||   |||  ||  | || ||||||||||| || || || || |||||||||| |||||| || || || ||||| |||||||||||||| |||||| ||||| | || ||||| |||||| |||
gtacagattccatttttct-tactttgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatgaattgttgttattgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT4G31700.2 (Arabidopsis thaliana), 3'ss of exon 1
--gtaaattttctgctttcttatttcttgatcca-tgccccctattgctg--atttcatacttaattata--ggtgtg---atgtgtttctttt-ttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
  ||| |  |||   |||  | |   |||||| | ||      |    |   |||||  |    || ||   | | ||   |||  ||  | || ||||||||||| || || || || |||||||||| |||||| || || || ||||| |||||||||||||| |||||| ||||| | || ||||| |||||| |||
aggtacagattccatttttct-tactttgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatgaattgttgttattgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
gtaaattttctgctttcttatttcttgatccatgccccctattg--ctgatttcatact-taattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
||||   ||   | || ||||    ||    |   |  ||||    ||   || |||    | ||||   |||  ||| | | | | |  ||||| ||||| || ||||| ||||| |||||||| || |||||||| ||||| |||||||||||||| |||||  | ||| ||||||||||  | ||  |||
gtaagcatttaccattgttatgcaatgccaaaattctactatcagactagatttatataacatttatttttgtt-tgtttgtttgtgtgacagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
|||   ||| || |    |  |||||     |     ||  ||| |        | | | |||| | |||    |     | |||  |||||||| ||||||||||| ||||| || ||||| || |||||||| ||||| || ||||||||||| ||||| |||||  | || || ||||  |||||||
gtatgattt-tgttactattcttcttaggataacttgccctttgttag-----gaatgatttattgatgtatcttaagcgtgtttgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 3
--gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
   |   ||||||||| |  |    |||  |   |  | | ||||| |   |  |    |||| |||      ||||   |||  ||  |||||||| ||||| ||||| ||||||||||||||||| |||||||| ||||| || || |||||||| ||||| |||||| |||| |||||  | ||| |||
gtatgccttttctgctcttctcccacttatt---tatctcatattgtttgatcta---ctaatcatacaaaacatgt-catctgcttcacagGAGTTCAAGGGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGC

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S311_33V6.2 (Physcomitrella patens), 3'ss of exon 3
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC---------
                                                                  ||  |  |||      ||    | ||||| ||||| || || |||||||| ||||| ||||||||||| || || ||||| |||||||| || ||  ||||    || ||||| |  || |||          
------------------------------------------------------------------gtcagtggtgaccagcttggtgatgagttcaagggatacgttttcaagattatgggaggatgtgacaagcagggtttccccatgaagCAGGGTGTCTTGACCCAGGGACGTGTGCAACTGCTGATGCACCGAG

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 2
----gtaaattttctgctttcttatttcttgatccat--gccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcag-
     |   | |   |    | | |||| || |  |   |    || | | || |||  |  |    | ||||| |||  |||   ||||  | |      |  | ||   |||| |     | ||      |       |    |   |||     ||||    | | | | || ||||  | |  ||   |  | |   
cagtttgtctctagaggcaccatttttcatggttgaacagaattctctgggtg-ttttgtcatggggtttaggtttgacatgtccattttgcgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCTCGGAGATGAGTTTAAGGGATATGTCTTCAAGATTATGGGAGGATGCGAT

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 2
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
                                ||    |    ||  |||| |   ||  |  | | | | |  |     |    ||||||| || || || |||||||||||||||||||| |||||||||||  | |||||||| |||||||| || || || |   |    ||||| ||||| ||| 
-------------------------------gtgaattcgtcggc--atttgagctttgctgtttgttctaagat----ttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGT

upper sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ26393 (Selaginella moellendorffii), 3'ss of exon 2
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
                                ||    |    ||  |||| |   ||  |  | | | | |  |     |    ||||||| || || || |||||||||||||||||||| |||||||||||  | |||||||| |||||||| || ||||| |   |    ||||| ||||| ||| 
-------------------------------gtgaattcgtcggc--atttgagctttgctgtttgttctaagat----ttgcagtgcagGAATTCAAAGGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149077949|gb|EE166681.2|EE166681
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|76923081|gb|DV169325.1|DV169325
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|211068384|gb|FL392622.1|FL392622
EST:     TTTATGACCGAA-GATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|211542573|gb|FL410011.1|FL410011
EST:     TTATAGACCGAA-GATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTAT-GACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|15312778|gb|BI478369.1|BI478369
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|211431422|gb|FL393492.1|FL393492
EST:     TTTATGACCGAAG-ATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         AAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|20300566|gb|BQ163509.1|BQ163509
EST:     TTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGGTGTG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGG
genomic: TTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCT-GGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGG
EST: gi|78079211|gb|DV507623.1|DV507623
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|5081006|gb|AI738268.1|AI738268
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGCGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|148969224|gb|EE019976.2|EE019976
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|67016348|gb|CO445097.1|CO445097
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGCGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|78024666|gb|DV493053.1|DV493053
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGCGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|29946749|gb|CB816306.1|CB816306
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|19058404|gb|BM737071.1|BM737071
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGGTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|21987949|gb|BQ779477.1|BQ779477
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGCGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|22819122|gb|BU499212.1|BU499212
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGCGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|15632345|gb|BI679438.1|BI679438
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|148966135|gb|EE017078.2|EE017078
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|71428551|gb|DR809601.1|DR809601
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|19057795|gb|BM736462.1|BM736462
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|148955068|gb|EC900579.2|EC900579
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|78075296|gb|DV503730.1|DV503730
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|20300275|gb|BQ163218.1|BQ163218
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|78088886|gb|DV517279.1|DV517279
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|93284111|gb|EB676375.1|EB676375
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|31406383|gb|CD485115.1|CD485115
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|67010291|gb|CO439040.1|CO439040
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGCGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|18654801|gb|BM499606.1|BM499606
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|31998590|gb|CD662145.1|CD662145
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
EST: gi|22935788|gb|BU572063.1|BU572063
EST:     TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGCGAG                         GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 6321

ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 4180

ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2952

ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2456

ACGTGCCTTTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC
                                     tgtgtttctttttt  CT-rich tract
            atttcatacttaatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG