Sequence
atgc intronic sequence ATGC exonic sequencegtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G851698_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 3
--gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGAT---------------------------------------------------------------
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gtatgccttttctgctcttctcccacttatt---tatctcatattgtttgatctac---taatcatacaaaacatgt-catctgcttcacagGAGTTCAAGGGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGC
upper sequence: GRMZM5G851698_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------------gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattat-aggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGAT-----
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cagtttgtctctagaggcaccatttttcatggttgaacagaattctctgggtgttttgtcatggggtttaggtttgacatgtccattttgcgtatttcagGCGTCAGTTCTATGACAAGCGGCTCGCTCAAGAGGTCAGCGGTGACCAGCTCGGAGATGAGTTTAAGGGATATGTCTTCAAGATTATGGGAGGATGCGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211523895|gb|FL150679.1|FL150679EST: TTTATGACCGAA-GATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAG GAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGAT
genomic: TTTATGACCGAAGGATCTCCCAGGAGGTCAGTGGTGATGCTCTGGGTGAGgtaaattttc ... ttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGAT
tgtgtttctttttt CT-rich tract
atttcatacttaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaattttctgctttcttatttcttgatccatgccccctattgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA