1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtgtacctaagtttttgaattttctctatgccacattcttacctttctctatgataagtgctaaacagatacctgcatgaaaacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
species | Zea mays |
transcript | GRMZM5G850355_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATAGGAGTTGTCTATAGEST: gi|6020544|gb|AW065472.1|AW065472
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: GCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|14203539|gb|BG837216.1|BG837216
genomic: GCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|15427202|gb|BI543024.1|BI543024
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|32934694|gb|CF039506.1|CF039506
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|211017640|gb|FL189740.1|FL189740
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|22520740|gb|BU079551.1|BU079551
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|5566889|gb|AI881800.1|AI881800
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|87156656|gb|DY401445.1|DY401445
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|14242859|gb|BG840665.2|BG840665
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|113702959|gb|EE680463.1|EE680463
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: GTGGATGAAACATCT G-GCAAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTTTATAGEST: gi|211014870|gb|FL189739.1|FL189739
genomic: GTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGC-AAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TTGCCACCGAGAAAGAAACTGCCTTCCTATTTTAGTGGATGAAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAAATATTGGAGTTGTCTATAGEST: gi|211535545|gb|FL366410.1|FL366410
genomic: TTGCCACCGAGAA-GAAACTGCCTTC-TATTTTAGTGGATGAAA-CATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAA-TATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|32908069|gb|CF012882.1|CF012882
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|9254141|gb|BE344609.1|BE344609
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|211408164|gb|FL390201.1|FL390201
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAATATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|9461620|gb|BE453822.1|BE453822
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|211156517|gb|FL164231.1|FL164231
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|14204267|gb|BG837944.1|BG837944
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|5456374|gb|AI834064.1|AI834064
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|29167732|gb|CB410992.1|CB410992
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|8367928|gb|BE050873.1|BE050873
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|12967998|gb|BG264945.1|BG264945
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|211158124|gb|FL164253.1|FL164253
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGCAGTTGTCTATAGEST: gi|211370171|gb|FL333604.1|FL333604
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|32912475|gb|CF017287.1|CF017287
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|40337252|gb|CK371322.1|CK371322
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|67018206|gb|CO446955.1|CO446955
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAG-AACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|211100498|gb|FL307608.1|FL307608
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|26559204|gb|CA831439.1|CA831439
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|211352174|gb|FL343457.1|FL343457
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|31355634|gb|CD439991.1|CD439991
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGEST: gi|32906923|gb|CF011736.1|CF011736
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
EST: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGTGGATGAAACATCT GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
genomic: TGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCTgtatgtgtac ... aacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
tcttacctttctctatgataagtgctaaacagatacctgcatgaaaacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
tgctaaa putative branch site (score: 2)
cttttc putative PPT
aaaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgtacctaagtttttgaattttctctatgccacattcttacctttctctatgataagtgctaaacagatacctgcatgaaaacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG