1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcatattcattctgtatattctatacacacttcgctaattctatctttgacaagtatgggtgattaactgattacatgtctccatgcttgattatgataaatatttctcatacttgtagGTTATTAATCTGTACCTTGAATTGTTGAAGGAGCGAGAAAAAAGAGAACCAAACAGGTTTCTGAAATGTCATTTCTTTAATACATTCTTTTATAAGAAG
species | Zea mays |
transcript | GRMZM5G849959_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGAGAAATTCCAGTGCTTGAGACGTGGCTGCTGGTTAAATGATGAG GTTATTAATCTGTACCTTGGATTGTTTGA-GGAGCGAGAAAAEST: gi|76289858|gb|DV029426.1|DV029426
genomic: GCAAAGAGAAATTCCAGTGCTTGAGACGTGGCTGCTGGTTAAATGATGAGgtcatattca ... atacttgtagGTTATTAATCTGTACCTTGAATTGTT-GAAGGAGCGAGAAAA
EST: GCAAAGAGAAATCCCAGTGCTTGAGACGTGGCTGCTGGGTAAATGATGAG GGTATTAATCTEST: gi|76912086|gb|DV164569.1|DV164569
genomic: GCAAAGAGAAATTCCAGTGCTTGAGACGTGGCTGCTGGTTAAATGATGAGgtcatattca ... atacttgtagGTTATTAATCT
EST: GCAAAGAGAAATTC-AGTGCTTGAGACGTGGCTGCTGGTTAAATGATGAG GTTATTAATCT
genomic: GCAAAGAGAAATTCCAGTGCTTGAGACGTGGCTGCTGGTTAAATGATGAGgtcatattca ... atacttgtagGTTATTAATCT
taactgattacatgtctccatgcttgattatgataaatatttctcatacttgtagGTTATTAATCTGTACCTTGAATTGTTGAAGGAGCGAGAAAAAAGAGAACCAAACAGGTTTCTGAAATGTCATTTCTTTAATACATTCTTTTATAAGAAG
tttctcat CT-rich tract
attatgataaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatattcattctgtatattctatacacacttcgctaattctatctttgacaagtatgggtgattaactgattacatgtctccatgcttgattatgataaatatttctcatacttgtagGTTATTAATCTGTACCTTGAATTGTTGAAGGAGCGAGAAAAAAGAGAACCAAACAGGTTTCTGAAATGTCATTTCTTTAATACATTCTTTTATAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG