1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cgtggcctgcacgctcggccgccctgcgcatgtcgcgggcgcgcctgcgcttgctgtaggtgcggccccacatgacattccctttgctgtttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAAATTCAAGTGATAGTATTCACACCATGATAAGGCCTTCATTTCCAAAATG
species | Zea mays |
transcript | GRMZM5G848692_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGNNN NNNNGGAATGGGTTAGGCTCTTTCGAAAGATCTCTGCAAGGTCCAACCAAAEST: gi|76010618|gb|DT937788.1|DT937788
genomic: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGAAAgtaagcaaag ... ttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAA
EST: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGNNN NNNNGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAAEST: gi|94477045|gb|EB706003.1|EB706003
genomic: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGAAAgtaagcaaag ... ttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAA
EST: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGNNN NNNNGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAAEST: gi|211031187|gb|FL230069.1|FL230069
genomic: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGAAAgtaagcaaag ... ttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAA
EST: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGCGNNN NNNNGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAAEST: gi|211031185|gb|FL230067.1|FL230067
genomic: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGAAAgtaagcaaag ... ttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAA
EST: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGNNN NNNNGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAAEST: gi|89251414|gb|DY623200.1|DY623200
genomic: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGAAAgtaagcaaag ... ttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAA
EST: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGNNN NNNNGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAAEST: gi|211031184|gb|FL230066.1|FL230066
genomic: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGAAAgtaagcaaag ... ttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAA
EST: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGCGNNN NNNNGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAAEST: gi|71440761|gb|DR821811.1|DR821811
genomic: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGAAAgtaagcaaag ... ttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAA
EST: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGNNN NNNNGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAA
genomic: GCTTGGATACCTGGAGTGTTACTTGGAATACATTGATTATCCAGGAGAAAgtaagcaaag ... ttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAA
tgcgcttgctgtaggtgcggccccacatgacattccctttgctgtttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAAATTCAAGTGATAGTATTCACACCATGATAAGGCCTTCATTTCCAAAATG
ttccctttgctgtttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtggcctgcacgctcggccgccctgcgcatgtcgcgggcgcgcctgcgcttgctgtaggtgcggccccacatgacattccctttgctgtttcgttgcagAAAAGGAATGGGTTAGGCTCTTTCGAAAGAACTCTGCAAGGTCCAACCAAAATTCAAGTGATAGTATTCACACCATGATAAGGCCTTCATTTCCAAAATG
- - - -tgcacgc
- - - - - - - - -gccgccc
- - - - - - - - - - - - -gcgcatg
- - - - - - - - - - - - - - - - - - - - - gcctgcg
- - - - - - - - - - - - - - - - - - - - - - - - -cttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatga