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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttacctgcacgacttgagctgtctctaaaatcatgctatcgtgttcacatctaattacctatgctaataactaatgctaccttgtgcttggttctcgactgtcggcctgtgcgctgtatcttgctctagGGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAA

Basic information

species Zea mays
transcript GRMZM5G846548_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G846548_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 3'ss of exon 3
gtaagtttacctgcacgacttgagctgtctctaaaatcatgctat-cgtgttcacatctaattacctatgctaataactaatgctaccttgtgcttggttctcgact--gtcggcctgtgcgctgtatcttgctctagGGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAA
                || ||    |   | |   |     || |  ||    |  |||| ||||||  | |  |||  | ||||   ||| |||  |||||   |   || ||  | |  ||| |   |   |  |||||||||| || ||||||||||||||| ||||||| |||
--------------gtgaattttttttcttgtggcaatgaactgtgtgtcacaatgtcta-ttaccttcgtttttaataactgct---ttgggctaagttcttagccaagttggtat-tatgctttgcttatttgcagGGTCTCTCGACTTACATCCGTGCAATGCTGTCTACTCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88755251|gb|DY539392.1|DY539392
EST:     GGAGCGTGACTCCGGATTATGTCCCGTTCCAGATGTGGGATACGTTGCAG                         GGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAA
genomic: GGAGCGTGACTCCGGATTATGTCCCGTTCCAGATGTGGGATACGTTGCAGgtaagtttac ... cttgctctagGGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctaccttgtgcttggttctcgactgtcggcctgtgcgctgtatcttgctctagGGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAA
                                            tcttgctct  CT-rich tract