1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttcacctgaagtttgcaacatactgtattcgctacccaacaaacatgtctgaaaagcgatgaggacatgtagtttagctgcgcgttttcttgttgcagGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACAGAGGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTC
species | Zea mays |
transcript | GRMZM5G846198_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAAGACAAGGGGAGACCATAAATATATTCTCTGTTGCTTCTGGGCATCT GTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACAEST: gi|32850563|gb|CD990244.1|CD990244
genomic: GCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCTTCTGGGCATCTgtatgtctcc ... cttgttgcagGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACA
EST: GCAAGACAAGGGGAGACCATAAATATATTCCCTGTTGCTTCTGGGCATCT GTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACAEST: gi|32835266|gb|CD974944.1|CD974944
genomic: GCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCTTCTGGGCATCTgtatgtctcc ... cttgttgcagGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACA
EST: GCAAGACAAGGGGAGACCATAAATATATTCTCTGTTGCTTCTGGGCATCT GTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACAEST: gi|32850558|gb|CD990239.1|CD990239
genomic: GCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCTTCTGGGCATCTgtatgtctcc ... cttgttgcagGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACA
EST: GCAAGCCAAGGGGAGACCATAAATATATTCCCTGTTGCCTCTGGGCATCT GTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACAEST: gi|32932543|gb|CF037355.1|CF037355
genomic: GCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCTTCTGGGCATCTgtatgtctcc ... cttgttgcagGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACA
EST: GCAAGACAAGGGGAGACCATAAATATATTCTCTGTTGCTTCTGGGCATCT GTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACAEST: gi|32850631|gb|CD990312.1|CD990312
genomic: GCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCTTCTGGGCATCTgtatgtctcc ... cttgttgcagGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACA
EST: GCAAGCCAAGGGGAGACCATAAATATATTCCCTGTTGCTTCTGGGCATCT GTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACAEST: gi|9743043|gb|BE519191.1|BE519191
genomic: GCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCTTCTGGGCATCTgtatgtctcc ... cttgttgcagGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACA
EST: GCAAGACAAGGGGAGACCATAAATATATTCTCTGTTGCTTCTGGGCATCT GTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACA
genomic: GCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCTTCTGGGCATCTgtatgtctcc ... cttgttgcagGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACA
catgtctgaaaagcgatgaggacatgtagtttagctgcgcgttttcttgttgcagGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACAGAGGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTC
ttttcttgtt CT-rich tract
tagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcacctgaagtttgcaacatactgtattcgctacccaacaaacatgtctgaaaagcgatgaggacatgtagtttagctgcgcgttttcttgttgcagGTATGAGCGTTTCCTCAAAATAATGATTTTGAGTGTTCTAAAAAAGACACAGAGGCCAGTGAAGTTTTGGTTCATTAAGAATTATCTATCTCCACAGTTC
- - cacctga
- - - - - - - - -caacata
- - - - - - - - - - - - - - - - - - - caacaaa
- - - - - - - - - - - - - - - - - - - - - - -catgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagctgc