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...cccttccccatgaccccacaaaaagtggtagcctctaggcactgggtccgaccttttttttctttaacattgcatcttattttgaacattttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTACCTCGAGGGGTTGTTTGCATCTTATTGATCTTGCTGGTAGTGAGAGGGTGGAG
species | Zea mays |
transcript | GRMZM5G845682_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAG TATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTA-CTCEST: gi|9733627|gb|BE512379.1|BE512379
genomic: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAGgtttgtcata ... ttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTACCTC
EST: GAGCAGTTGGTTCAACAGCACTAAATGTAGTGAAGTAGTCGGTCACACAG TATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTACCTCEST: gi|211520867|gb|FL034524.1|FL034524
genomic: GAGCAGTTGGTTCAACAGCACTAAATG-AGCGAAGTAGTCGGTCACACAGgtttgtcata ... ttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTACCTC
EST: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAG TATTCTAACTGTACATGTTCGAGGGTTGGATEST: gi|61119020|gb|DN559981.1|DN559981
genomic: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAGgtttgtcata ... ttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGAT
EST: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAG TATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCT
genomic: AGAGCAGTTGGTTCAACAGCACTAAATGAGCGAAGTAGTCGGTCACACAGgtttgtcata ... ttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCT
gtccgaccttttttttctttaacattgcatcttattttgaacattttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTACCTCGAGGGGTTGTTTGCATCTTATTGATCTTGCTGGTAGTGAGAGGGTGGAG
ctttaac putative branch site (score: 30)
ttttattt putative PPT
atcttattttgaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccttccccatgaccccacaaaaagtggtagcctctaggcactgggtccgaccttttttttctttaacattgcatcttattttgaacattttatttgcagTATTCTAACTGTACATGTTCGAGGGTTGGATTTGAAGAATGGATCTACCTCGAGGGGTTGTTTGCATCTTATTGATCTTGCTGGTAGTGAGAGGGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - -ccatgac
- - - - - - - - -acaaaaa
- - - - - - - - - - - - - - - - - - - gcactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattgca