1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaaaaaaacatcctcctcctgcgtgctcatccatattgtaccgctcagtaaatgcatggttcccacctctcgctacgttacttcctgcagttttgagtgatttgtgtttaatctttccttcacagGAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCCGGGAGGGGAGCACAAAGCACCTTGAGAAAGGAG
species | Zea mays |
transcript | GRMZM5G843914_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCG GAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCCEST: gi|149090325|gb|EE179631.2|EE179631
genomic: CTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCGgtaaaaaaaa ... tccttcacagGAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCC
EST: CTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCG GAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCCEST: gi|101392106|gb|EB817980.1|EB817980
genomic: CTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCGgtaaaaaaaa ... tccttcacagGAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCC
EST: CTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCG GAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCC
genomic: CTACAGACGCTTTGCGTTCTTCAGACAAGACGATTGTTCTACCTATGCCGgtaaaaaaaa ... tccttcacagGAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCC
cgctacgttacttcctgcagttttgagtgatttgtgtttaatctttccttcacagGAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCCGGGAGGGGAGCACAAAGCACCTTGAGAAAGGAG
gtttaat putative branch site (score: 39)
tttaatctttccttc CT-rich tract
tttaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaaaaacatcctcctcctgcgtgctcatccatattgtaccgctcagtaaatgcatggttcccacctctcgctacgttacttcctgcagttttgagtgatttgtgtttaatctttccttcacagGAAGTGGTAAAAGCTAAGGTCAAATGTGATATCACTAAGGAAGCTCAACCCGGGAGGGGAGCACAAAGCACCTTGAGAAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG