1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgcaagaatatttgcaccgtgccagtgcctgccaatatacatttgtgcagagctctacccttggcgccaaggaggttacatttttttaccttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAATCAGAGGGCCATGTTTGGAGACATTCAAGGGAAAGTGAAGCAGCTGGGTG
species | Zea mays |
transcript | GRMZM5G838961_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAATEST: gi|32823534|gb|CD963256.1|CD963256
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAAT
EST: GGGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAEST: gi|32801025|gb|CD953261.1|CD953261
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTA
EST: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAEST: gi|78125718|gb|DV544102.1|DV544102
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTA
EST: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAATEST: gi|32788987|gb|CD941223.1|CD941223
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAAT
EST: AGTGCATTTGCTCAGGGAACCGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAEST: gi|32801322|gb|CD953558.1|CD953558
genomic: AGTGCATTTGCTCAGGGAAC-GAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTA
EST: AGTGCATTTGCTCAGGGAACCGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAEST: gi|32823954|gb|CD963676.1|CD963676
genomic: AGTGCATTTGCTCAGGGAAC-GAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTA
EST: AGTGCATTTGCTCAGGGAACCGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAEST: gi|32800930|gb|CD953166.1|CD953166
genomic: AGTGCATTTGCTCAGGGAAC-GAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTA
EST: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAEST: gi|71758975|gb|DR956912.1|DR956912
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTA
EST: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAATEST: gi|32804431|gb|CD956667.1|CD956667
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAAT
EST: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCACTTAEST: gi|76017094|gb|DT944264.1|DT944264
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTA
EST: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAATEST: gi|211238072|gb|FL481633.1|FL481633
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAAT
EST: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAATEST: gi|76011973|gb|DT939143.1|DT939143
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAAT
EST: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAATEST: gi|32803397|gb|CD955633.1|CD955633
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAAT
EST: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAG ATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCCCTTA
genomic: GAGTGCATTTGCTCAGGGAACGAGCTTCCATTCATGGCAGCATCAACCAGgtattcctgg ... ttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTA
tgcagagctctacccttggcgccaaggaggttacatttttttaccttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAATCAGAGGGCCATGTTTGGAGACATTCAAGGGAAAGTGAAGCAGCTGGGTG
ccttgat putative branch site (score: 36)
catttttttacctt CT-rich tract
ttacattttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcaagaatatttgcaccgtgccagtgcctgccaatatacatttgtgcagagctctacccttggcgccaaggaggttacatttttttaccttgatttcagATTGATGAGGTAATTGGCCAAGCTCAAAGCACAAGAGTAGCTCTTAACAATCAGAGGGCCATGTTTGGAGACATTCAAGGGAAAGTGAAGCAGCTGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - -ttgcacc
- - - - - - - - - - - - -tgcctgc
- - - - - - - - - - - - - - - - - - -tacattt
- - - - - - - - - - - - - - - - - - - - - -tgtgcag