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gtgagcagactgaacttgttaattattgacctgcccgtttctctgatgaaatgtatgaatatgcgtcgcttttgtgtatccctaaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG
species | Zea mays |
transcript | GRMZM5G836250_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|149064613|gb|EE286484.2|EE286484
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|149085230|gb|EE174737.2|EE174737
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|149056940|gb|EE156494.2|EE156494
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|33466970|gb|CF244019.1|CF244019
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|78106830|gb|DV525248.1|DV525248
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: CCGAGGAGGACGAGGAAGNCA-CGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCCTCCA-CATCGACTEST: gi|148938587|gb|EC882914.2|EC882914
genomic: CCGAGGAGGACGAGGAAG-CAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCC-TCCAACATCGACT
EST: CCGAGGAGGACGAAGAAGCCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GGACTGCGTCTGCEST: gi|50327741|gb|CO522867.1|CO522867
genomic: CCGAGGAGGACGAGGAAGC-AACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGC
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|89759142|gb|DY688055.1|DY688055
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|211007786|gb|FL012051.1|FL012051
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|149088446|gb|EE177549.2|EE177549
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|71314865|gb|DR794058.1|DR794058
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|149095912|gb|EE181574.2|EE181574
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|148983226|gb|EE029190.2|EE029190
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|71768089|gb|DR966026.1|DR966026
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|71770843|gb|DR968780.1|DR968780
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|148932776|gb|EE285437.2|EE285437
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|71317308|gb|DR795339.1|DR795339
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|211005021|gb|FL012048.1|FL012048
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|94476279|gb|EB705237.1|EB705237
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|91055488|gb|EB165906.1|EB165906
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|91877810|gb|EB407767.1|EB407767
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCCTCCAACATCGACTGTGEST: gi|149040104|gb|EE046754.2|EE046754
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCC-TCCAACATCGACTGTG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|76282215|gb|DV021783.1|DV021783
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|74244032|gb|DT651946.1|DT651946
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|93284535|gb|EB676799.1|EB676799
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGATGAAGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|71438223|gb|DR819273.1|DR819273
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGEST: gi|71757120|gb|DR955057.1|DR955057
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
EST: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAG GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
genomic: TCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGgtgagcagac ... aaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGG
ttctctgatgaaatgtatgaatatgcgtcgcttttgtgtatccctaaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG
ccctaaa putative branch site (score: 3)
aaatgtatgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcagactgaacttgttaattattgacctgcccgtttctctgatgaaatgtatgaatatgcgtcgcttttgtgtatccctaaaattaaagGTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG
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