1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctccatgtctgttctttagcgtttgtgttttaattcagcgtgcttcatgtttctttacatgagtttcctccaagtaaggttttttgttttgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACGTGCTGCAACCTGGCAAGAACATGCTCGCCGCCGGATACTGCATGTACG
species | Zea mays |
transcript | GRMZM5G836250_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGTGTCTCCATCGGAACG ATCTTTGGGATTTATATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|50332539|gb|CO527665.1|CO527665
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|32920947|gb|CF025759.1|CF025759
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTATATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|50331045|gb|CO526171.1|CO526171
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|32921813|gb|CF026625.1|CF026625
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTATATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|32921310|gb|CF026122.1|CF026122
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTATATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
tcatgtttctttacatgagtttcctccaagtaaggttttttgttttgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACGTGCTGCAACCTGGCAAGAACATGCTCGCCGCCGGATACTGCATGTACG
ttttttgttttgtttt CT-rich tract
ttttttgttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctccatgtctgttctttagcgtttgtgttttaattcagcgtgcttcatgtttctttacatgagtttcctccaagtaaggttttttgttttgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACGTGCTGCAACCTGGCAAGAACATGCTCGCCGCCGGATACTGCATGTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC