1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatgatagagcagtagatttctttcttttaagagttctcttgcttgttttgattctgtttattgtattctgaagtgaaccaaactatgacctcaaaacagATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCATGGGCTCATAGTTCCATCCCACAAGCTGTTGCTTCATCAATGGTGAAAG
species | Zea mays |
transcript | GRMZM5G833032_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAGGCTTCCAAGAATG ATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCATEST: gi|50330402|gb|CO525528.1|CO525528
genomic: ACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAGGCTTCCAAGAATGgtgagacttc ... ctcaaaacagATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCAT
EST: ACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAGGCTTCCAAGAATG ATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCATEST: gi|78079532|gb|DV507944.1|DV507944
genomic: ACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAGGCTTCCAAGAATGgtgagacttc ... ctcaaaacagATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCAT
EST: ACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAGGCTTCCAAGAATG ATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCATEST: gi|211267586|gb|FK993694.1|FK993694
genomic: ACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAGGCTTCCAAGAATGgtgagacttc ... ctcaaaacagATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCAT
EST: ACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAGGCTTCCAAGAATG ATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCAT
genomic: ACCAAAGCGAAAAGCTGCCCATCCATATCCTCAGAAGGCTTCCAAGAATGgtgagacttc ... ctcaaaacagATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCAT
gttttgattctgtttattgtattctgaagtgaaccaaactatgacctcaaaacagATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCATGGGCTCATAGTTCCATCCCACAAGCTGTTGCTTCATCAATGGTGAAAG
ttttgat putative branch site (score: 4)
tttattgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgatagagcagtagatttctttcttttaagagttctcttgcttgttttgattctgtttattgtattctgaagtgaaccaaactatgacctcaaaacagATTCATCTTCCATCCATAGGAACTCTGGCATGAACGTGCCTGTTTCTTCATGGGCTCATAGTTCCATCCCACAAGCTGTTGCTTCATCAATGGTGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT