1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagatttgcgaaggttgtttcatagtgtctccttgtatattgccttgcacctaactttttatgacgctcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGGAGAG
species | Zea mays |
transcript | GRMZM5G832740_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTTGGGTGGAAATAT GATGCTGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|30031938|gb|CB833789.1|CB833789
genomic: TTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTT-GGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|149090255|gb|EE179558.2|EE179558
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|18173505|gb|BM348893.1|BM348893
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|14203013|gb|BG836690.1|BG836690
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|29544063|gb|CB604443.1|CB604443
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|32909109|gb|CF013921.1|CF013921
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCTGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|116816600|gb|EC859352.1|EC859352
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|211514494|gb|FL430420.1|FL430420
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTTGGAAATAT GATGCTGCACATGAGGAAGGGEST: gi|60343936|gb|DN210909.1|DN210909
genomic: TTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGT-GGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAG-AAGGG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|29544546|gb|CB604926.1|CB604926
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|30031937|gb|CB833788.1|CB833788
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|211046404|gb|FL436681.1|FL436681
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCTGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|5058748|gb|AI737224.1|AI737224
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: GATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATNCGGCNCATGAGAAGGGCCAGAGATNCAAGGAAGGCAAGTTTATTCTGEST: gi|50327958|gb|CO523084.1|CO523084
genomic: GATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|149090254|gb|EE179557.2|EE179557
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|16926162|gb|BM079230.1|BM079230
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|211198966|gb|FL379005.1|FL379005
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCTGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|18163201|gb|BM333040.1|BM333040
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|5847256|gb|AW000335.1|AW000335
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|78024572|gb|DV492959.1|DV492959
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|33942278|gb|CF348878.1|CF348878
genomic: TCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCTGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGEST: gi|211150629|gb|FL420957.1|FL420957
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCTGCACATGAGAAGGGCCAGAGATACAAEST: gi|5325164|gb|AI783355.1|AI783355
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAA
EST: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATAT GATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
genomic: TTTCTGATATCTTCTGTGTTGGCTGTGGATCCATAGTTGGGTGGAAATATgtaagatttg ... tcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTG
tagtgtctccttgtatattgccttgcacctaactttttatgacgctcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGGAGAG
acctaac putative branch site (score: 182)
cgctcttctct putative PPT
taactttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatttgcgaaggttgtttcatagtgtctccttgtatattgccttgcacctaactttttatgacgctcttctctagGATGCGGCACATGAGAAGGGCCAGAGATACAAGGAAGGCAAGTTTATTCTGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA