1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgcttctcctcccttatgtttcgccgatcaatgtgtcaatttttaccccgtgattattaatgtgaaatttgcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTGATACCTTTCGTTCAGAAGGGATTGTCACT
species | Zea mays |
transcript | GRMZM5G825512_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAA GACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTEST: gi|211176728|gb|FL201368.1|FL201368
genomic: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAAgtatgcttct ... gcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
EST: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAA GACGACTTTGGATGTGCGTGAATTGG-CATCCAGTTTGGCTGTGTCAGGCTEST: gi|149098295|gb|EE184263.2|EE184263
genomic: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAAgtatgcttct ... gcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
EST: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAA GACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTEST: gi|211176726|gb|FL201366.1|FL201366
genomic: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAAgtatgcttct ... gcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
EST: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAA GACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTEST: gi|22542104|gb|BU092542.1|BU092542
genomic: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAAgtatgcttct ... gcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
EST: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAA GACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTEST: gi|87155630|gb|DY400419.1|DY400419
genomic: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAAgtatgcttct ... gcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
EST: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAA GACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTEST: gi|26457204|gb|CA828787.1|CA828787
genomic: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAAgtatgcttct ... gcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
EST: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAA GACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTEST: gi|71444691|gb|DR825741.1|DR825741
genomic: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAAgtatgcttct ... gcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
EST: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAA GACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTEST: gi|148954922|gb|EC900410.2|EC900410
genomic: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAAgtatgcttct ... gcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
EST: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAA GACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTEST: gi|149098294|gb|EE184262.2|EE184262
genomic: AAGGCGTACATCAGATCATTCAATTCGCTCCAAAATGGTCTTGGTGTCAAgtatgcttct ... gcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
EST: CCAAAATGGTCTTGGTGTCAA GACGACTTGGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
genomic: CCAAAATGGTCTTGGTGTCAAgtatgcttct ... gcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCT
gatcaatgtgtcaatttttaccccgtgattattaatgtgaaatttgcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTGATACCTTTCGTTCAGAAGGGATTGTCACT
tattaat putative branch site (score: 8)
tttgccctt putative PPT
attattaatgtgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttctcctcccttatgtttcgccgatcaatgtgtcaatttttaccccgtgattattaatgtgaaatttgcccttgtagGACGACTTTGGATGTGCGTGAATTGGGCATCCAGTTTGGCTGTGTCAGGCTGATACCTTTCGTTCAGAAGGGATTGTCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT