1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcaaacagtctagttgcataatatatgcctaatttcacgttacttgtatcagcatttatgttcaacgtccactgtttacttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTGGTTTTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGACTAGTAACT
species | Zea mays |
transcript | GRMZM5G825226_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|26455029|gb|CA826612.1|CA826612
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|148934690|gb|EC878738.2|EC878738
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|71771875|gb|DR969812.1|DR969812
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|76925225|gb|DV170328.1|DV170328
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|21330525|gb|BQ485906.1|BQ485906
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|78082331|gb|DV510743.1|DV510743
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|78112273|gb|DV530667.1|DV530667
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|74237536|gb|DT645450.1|DT645450
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|149078049|gb|EE166790.2|EE166790
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|76918369|gb|DV167265.1|DV167265
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTEST: gi|28566726|gb|CB278374.1|CB278374
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
EST: AGGGCTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGEST: gi|87154553|gb|DY399342.1|DY399342
genomic: AGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGG-AACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAG
EST: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAG GGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
genomic: AAGGGTTATGGTTCACTTACAAAAACCCAAAAGCTTGAGTGGAACAACAGgtcaaacagt ... acttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCT
tttcacgttacttgtatcagcatttatgttcaacgtccactgtttacttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTGGTTTTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGACTAGTAACT
tttactt CT-rich tract
atttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaaacagtctagttgcataatatatgcctaatttcacgttacttgtatcagcatttatgttcaacgtccactgtttacttgttcagGGGCATGTCCACTATCCATGCGATATTCATCACAGTGGTGTCAGTGTACCTGGTTTTCTTCTCCAACCTATTCTCTGATGAGCTGGATGGACTAGTAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
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