1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtggttgttcttttcgcttatacttatttcttcatttatccatatcttagtttttaaccacaacaaggaaatctcaacttaactatcatctccgtgcccaattttgttttccttcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
species | Zea mays |
transcript | GRMZM5G824597_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGAEST: gi|78180984|gb|DV551357.1|DV551357
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGAEST: gi|94476028|gb|EB704986.1|EB704986
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGAEST: gi|7844188|gb|AW787410.1|AW787410
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGAEST: gi|7844190|gb|AW787412.1|AW787412
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGGTAAAATCTAGACTCTGAAAGAEST: gi|211498135|gb|FL115228.1|FL115228
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGG-AAAATCTAGACTCTGAAAGA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAEST: gi|94476019|gb|EB704977.1|EB704977
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGATTCTGAAAGAEST: gi|12046853|gb|BF729005.1|BF729005
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGAEST: gi|7844189|gb|AW787411.1|AW787411
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGTTATATCTAGACTCTGAAAGAEST: gi|94479639|gb|EB708597.1|EB708597
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGATTCTGAAAGAEST: gi|60350072|gb|DN217045.1|DN217045
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGAEST: gi|71326414|gb|DR799890.1|DR799890
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
EST: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAG AACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
genomic: CCTTGCGCTCTATGAATCTTACAAGACCAGGCAGGAACATGCATCCAGAGgtggttgttc ... tcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
aaatctcaacttaactatcatctccgtgcccaattttgttttccttcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
acttaac putative branch site (score: 48)
cccaattttgttttcc putative PPT
aattttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggttgttcttttcgcttatacttatttcttcatttatccatatcttagtttttaaccacaacaaggaaatctcaacttaactatcatctccgtgcccaattttgttttccttcctttgcagAACAAGAACGAGTGTCACAGCTCATGGAAAATCTAGACTCTGAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA