1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagggcagaaactttggtattctataagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCGACAAAGTTCGTTACTCAAGAGATACAAAGCTCAGTATAGTGCTTGTCC
species | Zea mays |
transcript | GRMZM5G823629_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCEST: gi|76280570|gb|DV020138.1|DV020138
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCEST: gi|71445237|gb|DR826287.1|DR826287
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCEST: gi|76281274|gb|DV020842.1|DV020842
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCEST: gi|78111635|gb|DV530032.1|DV530032
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCEST: gi|60337491|gb|DN204464.1|DN204464
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCEST: gi|50328555|gb|CO523681.1|CO523681
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: TCGTCGGAATGAATGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCEST: gi|31364467|gb|CD448822.1|CD448822
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCEST: gi|91051408|gb|EB161826.1|EB161826
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
EST: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAG ATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
genomic: TCGTCGGAATGAACGTTAGTTTGATGTGGAACTCTGTTGGATTCTATCAGgtgagggcag ... cccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTC
taagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCGACAAAGTTCGTTACTCAAGAGATACAAAGCTCAGTATAGTGCTTGTCC
tactaat putative branch site (score: 1)
tatcttgcccttttc putative PPT
tatatactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagggcagaaactttggtattctataagtatattggagttaaacgtatatactaatgctgtgtatcttgcccttttcagATCGCGAAGTTGTGTATCATTCCAGTCTTATGCATTCTGGAAATCATATTCGACAAAGTTCGTTACTCAAGAGATACAAAGCTCAGTATAGTGCTTGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA