1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatcttcgctgatccatcaagttgcaaccttggcttgcatatgaagtcaataaagcatgcttgaatttctctgtttcctctgtagTACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCATCCGTCTGCTTGTGAAGATATGGGGTCAGCAGTATCAGTAGTTGAGGCTG
species | Zea mays |
transcript | GRMZM5G823484_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTAGCTATTCTTCAGCAG TACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCATEST: gi|32802642|gb|CD954878.1|CD954878
genomic: CGTAGCTATTCTTCAGCAGgtaatcttcg ... tcctctgtagTACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCAT
EST: TTATGATTGCTGTGCAGCGTTGTACCAGTAGCGTAGCTATTCTTCAGCAG TACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCATEST: gi|32804847|gb|CD957083.1|CD957083
genomic: TTATGATTGCTGTGCAGCGTTGTACCAGTAGCGTAGCTATTCTTCAGCAGgtaatcttcg ... tcctctgtagTACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCAT
EST: TTATGATTGCTGTGCAGCGTTGTACCAGTAGCGTAGCTATTCTTCAGCAG TACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCATEST: gi|71434510|gb|DR815560.1|DR815560
genomic: TTATGATTGCTGTGCAGCGTTGTACCAGTAGCGTAGCTATTCTTCAGCAGgtaatcttcg ... tcctctgtagTACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCAT
EST: TTATGATTGCTGTGCAGCGTTGTACCAGTAGCGTAGCTATTCTTCAGCAG TACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCATEST: gi|5847426|gb|AW000505.1|AW000505
genomic: TTATGATTGCTGTGCAGCGTTGTACCAGTAGCGTAGCTATTCTTCAGCAGgtaatcttcg ... tcctctgtagTACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCAT
EST: GCTGTGCAGCGTTGTACCAGTAGCGTAGCTATTCTTCAGCAG TACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCAT
genomic: GCTGTGCAGCGTTGTACCAGTAGCGTAGCTATTCTTCAGCAGgtaatcttcg ... tcctctgtagTACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCAT
tggcttgcatatgaagtcaataaagcatgcttgaatttctctgtttcctctgtagTACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCATCCGTCTGCTTGTGAAGATATGGGGTCAGCAGTATCAGTAGTTGAGGCTG
tttctctgtttcctct CT-rich tract
tcaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcttcgctgatccatcaagttgcaaccttggcttgcatatgaagtcaataaagcatgcttgaatttctctgtttcctctgtagTACTTCTCAAATACCATATCTCGGCTCTTGCTACCTGTTGATGGTGCTCATCCGTCTGCTTGTGAAGATATGGGGTCAGCAGTATCAGTAGTTGAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA