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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacttgcttgactgagctttttttcagttcttgctgcttctgatctactactgtatgagcttgttttcagGTGGGCTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG

Basic information

species Zea mays
transcript GRMZM5G822098_T05
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G822098_T05 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g35644.1 (Oryza sativa), 3'ss of exon 3
------------------------------gtgacttgcttgactgagctttttttcagttcttgctgcttctgatctactactgtatgagcttgttttcagGTGGGCTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG
                                 | ||  ||||   |   || ||        ||||| || || |||   | | | |||  | |||  |||||||||||| || |||||||||||||| | ||||||||||||||| || ||||||
catgagtgtgtgtgatgggttgtgatgctatctaattatttgatcaaaagttcttgtgtgctctgctggtt-tggtctga-agtctctgaattcgttcacagGTGGGCTGCTAGAGTGCTGGTGAACAGTGCCGAAGCCTGCCGGCATGGTCGCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttttttcagttcttgctgcttctgatctactactgtatgagcttgttttcagGTGGGCTGCCAGGGTGCTGGTGAACAGCGTCGAAGCCTGCCGGCACGGCCGCAAG
                      ttctgat  putative branch site (score: 3)
                                            cttgttttc  putative PPT
                                             ttgtttt  TA-rich tract