1 5' 3' | 2 5' 3' | 3 5' 3' |
...tactgtagttatcttctgagcagataggtagatattagttggactagcctatcatttatcaagcaatttgttgaaaccctggttgtgtttgatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGGGCAGGTCCCTAACATAAACGGGAATCCCTTCAACGGAGGACTACCCCA
species | Zea mays |
transcript | GRMZM5G821024_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|71763914|gb|DR961851.1|DR961851
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|76921490|gb|DV168603.1|DV168603
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|76289896|gb|DV029464.1|DV029464
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|76291030|gb|DV030598.1|DV030598
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTTTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|74233755|gb|DT641669.1|DT641669
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|74235022|gb|DT642936.1|DT642936
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTTTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|71443974|gb|DR825024.1|DR825024
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTTTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|71427971|gb|DR809021.1|DR809021
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTTTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|89250945|gb|DY622731.1|DY622731
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|78121824|gb|DV540208.1|DV540208
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|50330894|gb|CO526020.1|CO526020
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTTTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|110519434|gb|EE023832.1|EE023832
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|88755380|gb|DY539521.1|DY539521
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGTTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|93282762|gb|EB675026.1|EB675026
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACCAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGEST: gi|71760728|gb|DR958665.1|DR958665
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTTTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|60339341|gb|DN206314.1|DN206314
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|50327404|gb|CO522530.1|CO522530
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|101396399|gb|EB820126.1|EB820126
genomic: GCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGEST: gi|86469183|gb|DY235553.1|DY235553
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
EST: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATG CTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
genomic: GCTGAAGCTCCGGCTGCAGGCCATGGAAGAACAAGCTAAACTCCGAGATGgtacgtagtc ... gatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAG
agcctatcatttatcaagcaatttgttgaaaccctggttgtgtttgatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGGGCAGGTCCCTAACATAAACGGGAATCCCTTCAACGGAGGACTACCCCA
gtttgat putative branch site (score: 5)
atcatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgtagttatcttctgagcagataggtagatattagttggactagcctatcatttatcaagcaatttgttgaaaccctggttgtgtttgatgatgcagCTCTAAATGACGCCCTGAGAGAAGAAGTCCAGCGGCTTAAGATAGCCACAGGGCAGGTCCCTAACATAAACGGGAATCCCTTCAACGGAGGACTACCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - -tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt