1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtaaatagaggcgggcatattgtgttgtgaaagcccaggatctgtcatcttgtaatcttatgagctactactctatgtagAATTATCCGTGCTTTCTTGGTTGAGGAGCAGAAGATTGTCAAGAAGGTCCTGAAAATACAGAAAACCAAGGACAAGACAGCTGCAAAGTAGAGCTCCAGG
species | Zea mays |
transcript | GRMZM5G820996_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG AATTATCCGTGCTTTCTTGGTTGAGGAGCAGAAGATTGTCAAGAAGGTCCTEST: gi|4624308|gb|AI615141.1|AI615141
genomic: GTTAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctctatgtagAATTATCCGTGCTTTCTTGGTTGAGGAGCAGAAGATTGTCAAGAAGGTCCT
EST: GTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAG AATTATCCGTGCTTTCTTGGTTGAGGAGCAGAAGATTGTCAAGAAGGTCCT
genomic: GTCCTTATGGTGGAGTACTCTCTGGAATTGCTGTTAGGGAGAGgtgagtaaat ... ctctatgtagAATTATCCGTGCTTTCTTGGTTGAGGAGCAGAAGATTGTCAAGAAGGTCCT
tgtgaaagcccaggatctgtcatcttgtaatcttatgagctactactctatgtagAATTATCCGTGCTTTCTTGGTTGAGGAGCAGAAGATTGTCAAGAAGGTCCTGAAAATACAGAAAACCAAGGACAAGACAGCTGCAAAGTAGAGCTCCAGG
ctactct CT-rich tract
taatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaaatagaggcgggcatattgtgttgtgaaagcccaggatctgtcatcttgtaatcttatgagctactactctatgtagAATTATCCGTGCTTTCTTGGTTGAGGAGCAGAAGATTGTCAAGAAGGTCCTGAAAATACAGAAAACCAAGGACAAGACAGCTGCAAAGTAGAGCTCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT