1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcaatatccttataagtgctgtttggttttccactctgaattatatgatcttaactgttttttttggggtccgttgctcatgttagcatcaaagACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACATAGGGAGATCTGATGGAATAAAGTCTATCCCCTCTTACTTTAGCGGTGGCAAGGATG
species | Zea mays |
transcript | GRMZM5G818887_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|148960724|gb|EE011368.2|EE011368
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|78091451|gb|DV519825.1|DV519825
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|78091451|gb|DV519825.1|DV519825
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|149045355|gb|EE047779.2|EE047779
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|149045355|gb|EE047779.2|EE047779
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|76013821|gb|DT940991.1|DT940991
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|76013821|gb|DT940991.1|DT940991
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|71313249|gb|DR793148.1|DR793148
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|71313249|gb|DR793148.1|DR793148
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|87156323|gb|DY401112.1|DY401112
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|87156323|gb|DY401112.1|DY401112
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|78113031|gb|DV531425.1|DV531425
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|78113031|gb|DV531425.1|DV531425
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|76016277|gb|DT943447.1|DT943447
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CEST: gi|76016277|gb|DT943447.1|DT943447
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG C
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... agcatcaaag-
attatatgatcttaactgttttttttggggtccgttgctcatgttagcatcaaagACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACATAGGGAGATCTGATGGAATAAAGTCTATCCCCTCTTACTTTAGCGGTGGCAAGGATG
tcttaac putative branch site (score: 4)
ttaactgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaatatccttataagtgctgtttggttttccactctgaattatatgatcttaactgttttttttggggtccgttgctcatgttagcatcaaagACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACATAGGGAGATCTGATGGAATAAAGTCTATCCCCTCTTACTTTAGCGGTGGCAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG