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gtcaatatccttataagtgctgtttggttttccactctgaattatatgatcttaactgttttttttggggtccgttgctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACATAGGGAGATCTGATGGAATAAAGTCTATCCCCTCTTACTTTAGCGGTGG
species | Zea mays |
transcript | GRMZM5G818887_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|61236719|gb|DN586461.1|DN586461
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGCCAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|148960724|gb|EE011368.2|EE011368
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|76013821|gb|DT940991.1|DT940991
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|211435031|gb|FL327502.1|FL327502
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: TGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTAATGGACACCTTGGACEST: gi|78091451|gb|DV519825.1|DV519825
genomic: TGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCT-ATGGACACCTTGGAC
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|67010369|gb|CO439118.1|CO439118
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGCCAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|149045355|gb|EE047779.2|EE047779
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|86468327|gb|DY234697.1|DY234697
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGTTCTCGATGAGGATGGCGAGGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|87156323|gb|DY401112.1|DY401112
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|71313247|gb|DR793147.1|DR793147
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGCTGGCTTGCACCACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|71313249|gb|DR793148.1|DR793148
genomic: GGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|76016277|gb|DT943447.1|DT943447
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACAEST: gi|78113031|gb|DV531425.1|DV531425
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
EST: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAG CATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
genomic: GGTTCTCGATGAGGATGGCGAAGGCTGGCTTGCAACACATGGAGTGCAAGgtcaatatcc ... ctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACA
cactctgaattatatgatcttaactgttttttttggggtccgttgctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACATAGGGAGATCTGATGGAATAAAGTCTATCCCCTCTTACTTTAGCGGTGG
tcttaac putative branch site (score: 71)
aattatatgatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaatatccttataagtgctgtttggttttccactctgaattatatgatcttaactgttttttttggggtccgttgctcatgttagCATCAAAGACAGAAGAGGAGGAAGACATTCCCTCTATGGACACCTTGGACATAGGGAGATCTGATGGAATAAAGTCTATCCCCTCTTACTTTAGCGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA