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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataccgagactagaacatgaatagaattctgtacatcccttattacatactgatcatggcaagcatcaaaacattgaattgatcttgttgcatcatgcagTTCTTATCAATGAAGCTCGCAACGGTAAACCCAAGGCTCGACCTCAACATAGAAGGGCTTCTATCGAAAGAT

Basic information

species Zea mays
transcript GRMZM5G818643_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G818643_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g29830.1 (Oryza sativa), 3'ss of exon 5
------------------------------------------------------------------ataccgagactagaacatgaatagaattctgtacatcccttattac-----atactgatcatggcaagcatcaaaacattgaat--tgatcttg-ttgcatcatgcagTTCTTATCAATGAAGCTCGCAACGGTAAACCCAAGGCTCGACCTCAACATAGAAGGGCTTCTATCGAAAGAT
                                                                    | |   |||     || | |             |  ||  | ||     ||      ||||| || |  ||||||    |||  ||| |||  ||   |  ||||||||||||| |||||||| || || |||||||||||||| ||||||||||||||||||||||| || ||||| 
gtactgttcctctaaggttctgactatccacatttactgttgaaaattgtcatgtaggattgaatagaatcactacttatttataatttaccagagacgtgtttctagtaactaattatgtctgccatggtaaaccacaaaacggaaaatgctgaccttccttttgtattgcagTTCTTATCGATGAAGCTTGCGACAGTAAACCCAAGGCTTGACCTCAACATAGAAGGGCTTCTTTCAAAAGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74233164|gb|DT641078.1|DT641078
EST:     TGCTTGACGAGATCTTCAACTATGTCCAGTCCCTGCAAAGACAAGTCGAG                         TTTTTATCAATGAAGCTCGCAACGGTAAACCCAAGGCTCGACCTCAACATA
genomic: TGCTTGACGAGATCATCAACTATGTCCAGTCCCTGCAAAGACAAGTCGAGgtaatcagta ... catcatgcagTTCTTATCAATGAAGCTCGCAACGGTAAACCCAAGGCTCGACCTCAACATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catactgatcatggcaagcatcaaaacattgaattgatcttgttgcatcatgcagTTCTTATCAATGAAGCTCGCAACGGTAAACCCAAGGCTCGACCTCAACATAGAAGGGCTTCTATCGAAAGAT
                      aaaacatt  TA-rich tract