Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatttacaacaaactcctatcagcgtctaaattgttttatatgttcattctaccatcctttttttttatatcaagcagttcccttatatcaagcagacaggcactataaactgcaccagcactgatacgatattgtctttcatttgtttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCT

Basic information

species Zea mays
transcript GRMZM5G817037_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G817037_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 3'ss of exon 3
gtaaaatttacaacaaactcctatcagcgtctaaattgttttatatgttcattctaccatcctttttttttatatcaagcagttcccttatatcaagcagacaggcactataaactgcaccagcactgatacgatattgtctttcatttgtttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCT
                                                 || | |   |   ||     | ||   ||   |  |   |  ||    |||   |   ||   |      | | |     ||   |||||     ||||||||| | ||  ||||||||| |||||||| |||||||||||||||||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||||| || |
-------------------------------------------------cact-tggaagtgttcaagctaatgcaaatatgcacttctgaat-gttcag---gatgctcccagtattgctatc-----taaattattgctgcccatttgtttttgta--gCTGTACCAGCACCAGCACAATAAAAGGATGAGCTGCCCTGCCATGGCACAACTGCTCTCCAACACTCTGTACTACAAGCGATTCTTCCCATATTATGCTT

upper sequence: GRMZM5G817037_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S197_22V6.2 (Physcomitrella patens), 3'ss of exon 4
gtaaaatttacaacaaactcctatcagcgtctaaattgttttatatgttcattctaccatcctttttttttatatcaagcagttcccttatatcaagcagacaggcactataaactgcaccagcactgatacgatattgtctttcatttgtttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCT
                                         || |   ||    |||  ||   | ||  |  || |  |  ||    || |  ||  || ||| || ||  ||          |||||  |   ||| || |||||      |||| ||| | || || ||||||||||| ||   ||||||||| || || |||||||| || || || ||||| || ||||||||||||||||| || |||||||| |
----------------------------------------gtacagaatccagatac--tcgcgtgttggtgcattagtcgcttg---tagagtaattag-cagacattaagaa----------actgaagc---attttccttcat------gtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78118564|gb|DV536948.1|DV536948
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211289621|gb|FL244434.1|FL244434
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211149992|gb|FL260584.1|FL260584
EST:     TCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAGATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACA
genomic: TCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGA-ATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACA
EST: gi|71433500|gb|DR814550.1|DR814550
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGGTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|71433501|gb|DR814551.1|DR814551
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211287471|gb|FL244413.1|FL244413
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211291759|gb|FL244447.1|FL244447
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|149105264|gb|EE290754.2|EE290754
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211291754|gb|FL244442.1|FL244442
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211291758|gb|FL244446.1|FL244446
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211287474|gb|FL244416.1|FL244416
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|50339217|gb|CO534343.1|CO534343
EST:     AGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAGTAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: AGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211302464|gb|FL244526.1|FL244526
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211289613|gb|FL244426.1|FL244426
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211402444|gb|FL244547.1|FL244547
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|148953910|gb|EC899291.2|EC899291
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211396164|gb|FL318371.1|FL318371
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211399899|gb|FL244535.1|FL244535
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211287479|gb|FL244421.1|FL244421
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211399902|gb|FL244538.1|FL244538
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211296046|gb|FL244480.1|FL244480
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211302455|gb|FL244517.1|FL244517
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211287475|gb|FL244417.1|FL244417
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACACAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACA
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACAC-CAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACA
EST: gi|211300324|gb|FL244509.1|FL244509
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211291764|gb|FL244452.1|FL244452
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211296047|gb|FL244481.1|FL244481
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211302462|gb|FL244524.1|FL244524
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211293897|gb|FL244457.1|FL244457
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211399903|gb|FL244539.1|FL244539
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|85152368|gb|DW587710.1|DW587710
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|33942254|gb|CF348854.1|CF348854
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCCAGCTGCCAGAGAGTTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211399907|gb|FL244543.1|FL244543
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211287480|gb|FL244422.1|FL244422
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211427862|gb|FL460786.1|FL460786
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211289617|gb|FL244430.1|FL244430
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|7009428|gb|AW455693.1|AW455693
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|18174710|gb|BM350098.1|BM350098
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211302461|gb|FL244523.1|FL244523
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|32801045|gb|CD953281.1|CD953281
EST:     TAAGACTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211296041|gb|FL244475.1|FL244475
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGNACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|116817176|gb|EC859993.1|EC859993
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211289618|gb|FL244431.1|FL244431
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|32858194|gb|CD997875.1|CD997875
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211289627|gb|FL244440.1|FL244440
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|148965092|gb|EE015909.2|EE015909
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|31352578|gb|CD436935.1|CD436935
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211300320|gb|FL244505.1|FL244505
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211293905|gb|FL244465.1|FL244465
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211296049|gb|FL244483.1|FL244483
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211302456|gb|FL244518.1|FL244518
EST:     TTMAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211399904|gb|FL244540.1|FL244540
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|149105265|gb|EE290755.2|EE290755
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211293898|gb|FL244458.1|FL244458
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|32859552|gb|CD999233.1|CD999233
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211289626|gb|FL244439.1|FL244439
EST:     TTCAAGGTGATATTAAGGSTCTGCARAAGAACCTAGCTGCCARAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|148930814|gb|EC873185.2|EC873185
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211291763|gb|FL244451.1|FL244451
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACRCCAGCATAATARRAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|91868767|gb|EB400150.1|EB400150
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211300330|gb|FL244515.1|FL244515
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211298177|gb|FL244489.1|FL244489
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGGCCCATGGGCA
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCG-CC-ATGG-CA
EST: gi|32858122|gb|CD997803.1|CD997803
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211296045|gb|FL244479.1|FL244479
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|71433723|gb|DR814773.1|DR814773
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|71316983|gb|DR795175.1|DR795175
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211291765|gb|FL244453.1|FL244453
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211300317|gb|FL244502.1|FL244502
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|148965093|gb|EE015910.2|EE015910
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211298175|gb|FL244487.1|FL244487
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211289616|gb|FL244429.1|FL244429
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|31351401|gb|CD435758.1|CD435758
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211298184|gb|FL244496.1|FL244496
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211289614|gb|FL244427.1|FL244427
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|31356308|gb|CD440665.1|CD440665
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
EST: gi|211302468|gb|FL244530.1|FL244530
EST:     TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTG                         CTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG
genomic: TTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 321

GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 418

GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 401

GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 220

GGCTGACAAATGTGTACTGGCATCTTCTGGCTTTCAAGGTGATATTAAGGCTCTGCAGAAGAACCTAGCTGCCAGAGAATTGgtaaaattta ... ttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actataaactgcaccagcactgatacgatattgtctttcatttgtttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCT
                 cactgat  putative branch site (score: 220)
                                 tctttcatttgttt  putative PPT
                                       atttgtttgtatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaatttacaacaaactcctatcagcgtctaaattgttttatatgttcattctaccatcctttttttttatatcaagcagttcccttatatcaagcagacaggcactataaactgcaccagcactgatacgatattgtctttcatttgtttgtatatagCTGTACCAACACCAGCATAATAAAAGGATGAGCTGCCCCGCCATGGCACAGCTCCTCTCCAATACCCTGTACTACAAGCGATTCTTCCCATATTACGCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC