1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttacaacacttattattctgtcgccagtttgtggatattatttgacttggtggtgatattgttgtttcacatttaactgatttacattttacctttagGTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAGGTTAGCTATTATAGCAAGTCTGTGCTCTCAGGGCTCGTGATTTCTACAGGTGGTTTGC
species | Zea mays |
transcript | GRMZM5G816015_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGAGTTGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCG GTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAAGTTAGCTATEST: gi|87153556|gb|DY398345.1|DY398345
genomic: GGGAGTTGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCGgtaagtgatt ... ttacctttagGTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAGGTTAGCTAT
EST: GGGAGTTGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCG GTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAAGTTAGCTATEST: gi|87153603|gb|DY398392.1|DY398392
genomic: GGGAGTTGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCGgtaagtgatt ... ttacctttagGTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAGGTTAGCTAT
EST: GGGAGTTGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCG GTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAAGTTAGCTATEST: gi|211263861|gb|FL390541.1|FL390541
genomic: GGGAGTTGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCGgtaagtgatt ... ttacctttagGTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAGGTTAGCTAT
EST: TGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCG GTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAGGTTAGCTATEST: gi|19058079|gb|BM736746.1|BM736746
genomic: TGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCGgtaagtgatt ... ttacctttagGTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAGGTTAGCTAT
EST: GGGAGTTGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCG GTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAAGTTAGCTATEST: gi|22490272|gb|BU050195.1|BU050195
genomic: GGGAGTTGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCGgtaagtgatt ... ttacctttagGTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAGGTTAGCTAT
EST: GGGAGTTGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCG GTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAAGTTAGCTAT
genomic: GGGAGTTGCTTGAAGAAATTATTCCCAACAGCAGAGATTTGGAGTGGGCGgtaagtgatt ... ttacctttagGTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAGGTTAGCTAT
gacttggtggtgatattgttgtttcacatttaactgatttacattttacctttagGTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAGGTTAGCTATTATAGCAAGTCTGTGCTCTCAGGGCTCGTGATTTCTACAGGTGGTTTGC
aactgat putative branch site (score: 30)
ttttaccttt putative PPT
atttaactgatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttacaacacttattattctgtcgccagtttgtggatattatttgacttggtggtgatattgttgtttcacatttaactgatttacattttacctttagGTTCCTACTGTGTCATATCCACGATTGGTGAAACTTCTTCAGGTTAGCTATTATAGCAAGTCTGTGCTCTCAGGGCTCGTGATTTCTACAGGTGGTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG