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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcactttggagttagattagtgtgcatatataggattcattagctccattaaatccttgtcacccaatgtgtacttcgtgtttgcgtgtgctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAAACAGGTGTCCACATTACATCCTCAACTATCTACACTTCTACCTTACACA

Basic information

species Zea mays
transcript GRMZM5G814310_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G814310_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g45770.2 (Oryza sativa), 3'ss of exon 12
ttcactttggagttagattagtgtgcatatataggattcattagctccattaaa------tccttgtcacccaatgtgtacttcgtgtttgcgtgtgctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAAACAGGTGTCCACATTACATCCTCAACTATCTACACTTCTACCTTACACA
  ||  | || |  | ||| || |   ||       || |  |||   |  |||      ||| |||| |||| ||| |        || || |||| ||||| |||||||||| || |||||||||||  |||| ||||| ||| ||||||| ||||| ||||| || || ||||||||||| ||||| || || || ||||| |
cgcaagtaggggacaaatt-gtatatttaatgcatgtttaacagcaaaacaaaaaaaaagtccatgtc-cccattgtatttac----ttggcttgtgttgctttagGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAAACGGGTGTTCAGATCACATCCTCAACCATCTATACATCAACATTACATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71435715|gb|DR816765.1|DR816765
EST:     CGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAG                         GTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAA
genomic: CGGCAGCATTCATGCAGCACCTGATTTTATATTTTTGGAACCGTTTTGAGgtaagttaat ... gctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccattaaatccttgtcacccaatgtgtacttcgtgtttgcgtgtgctgcttcagGTGCCAGCTCTCCAGAGATTCATGCGAAGTCGAGCACACATTCACCAGCAAACAGGTGTCCACATTACATCCTCAACTATCTACACTTCTACCTTACACA
                                              ctgcttc  CT-rich tract
     taaat  TA-rich tract