1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taatggaagttttgcctatggaatttctatccggtccttcatcttgttcttttcgtacttggattatttaaagtctaatgactttgtatttcactcctagTATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGACTAAGGAAATAGAAGCAAACTCAACAAACAAAGACTGCATAAAAATGCT
species | Zea mays |
transcript | GRMZM5G809265_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCTCAGGGAATTATTTTAG TATATGATGTCACAAAGAGAGAAAGTTTCTCAAATTTGGCGGATGTTTGGAEST: gi|211183625|gb|FL445775.1|FL445775
genomic: GTGCTCAGGGAATTATTTTAGgtaagacagt ... tcactcctagTATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGA
EST: TAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAG TATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGAEST: gi|211479208|gb|FL282801.1|FL282801
genomic: TAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAGgtaagacagt ... tcactcctagTATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGA
EST: TAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAG TATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGA
genomic: TAGGACAATAACTAGTTCTTACTACAGAGGTGCTCAGGGAATTATTTTAGgtaagacagt ... tcactcctagTATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGA
gttcttttcgtacttggattatttaaagtctaatgactttgtatttcactcctagTATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGACTAAGGAAATAGAAGCAAACTCAACAAACAAAGACTGCATAAAAATGCT
gtctaat putative branch site (score: 3)
tttcactcct putative PPT
attatttaaagtctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatggaagttttgcctatggaatttctatccggtccttcatcttgttcttttcgtacttggattatttaaagtctaatgactttgtatttcactcctagTATATGATGTCACAAAGAGAGAGAGTTTCTCAAATTTGGCTGATGTTTGGACTAAGGAAATAGAAGCAAACTCAACAAACAAAGACTGCATAAAAATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA