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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggcatgctgaaactgtttgtataacatatttggttcttttcgttcgcaatgatgagcaatgttattgaaagatgtgctgatgttgctttcttttccagGTGATTATGGAGATTCCGTTGGAGCTGATGCTGACTATAACTCAAAAGAAACCTTGGATGTTTTTCCCTGACATTATTCCACTAGGCCATCCTATATTTG

Basic information

species Zea mays
transcript GRMZM5G807767_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G807767_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g50980.1 (Oryza sativa), 3'ss of exon 2
-ttggcatgctgaaactgtttgtataacatatttggttcttttcgttcgcaatgatgagcaatgttattgaaagatgtgctgatgttgctttc--ttttccagGTGATTATGGAGATTCCGTTGGAGCTGATGCTGACTATAACTCAAAAGAAACCTTGGATGTTTTTCCCTGACATTATTCCACTAGGCCATCCTATATTTG
  | |  || | |     |||  | ||| || ||   | |  ||   | || | |||   ||| || |||  | || |    |  ||  ||||  |||  |||||||||||||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||| |||||||
gctcgtgtgttcactactttttaagaac-tagttaagtttaatca--cacacttatgcataatcttcttggcatatatataaaaattcatttcactttatcagGTGATTATGGAGATTCCATTGGAGCTGATGCTGACTATAACTCAAAAACGCCCTTGGATGTTTTTCCCCGACATTATTCCACTAGGCCATCCCATATTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgcaatgatgagcaatgttattgaaagatgtgctgatgttgctttcttttccagGTGATTATGGAGATTCCGTTGGAGCTGATGCTGACTATAACTCAAAAGAAACCTTGGATGTTTTTCCCTGACATTATTCCACTAGGCCATCCTATATTTG
                               tgctgat  putative branch site (score: 3)
                                     tgttgctttcttttcc  CT-rich tract
              aatgttatt  TA-rich tract