1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...actttcaaaaactcaatcatctgtcttttcttcaacaaatattaaagcgccaataaatgatctatgctggaagctgatgtaatttgtattactcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAGAAGACAACTTTTGGCAGTTATATTCTGATTTTTTGCCAAGTGTTGATG
species | Zea mays |
transcript | GRMZM5G807767_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAG ACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAEST: gi|91051727|gb|EB162145.1|EB162145
genomic: TTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAGgtaggtggat ... actcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATA
EST: TTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAG ACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAEST: gi|149029834|gb|EE286274.2|EE286274
genomic: TTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAGgtaggtggat ... actcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATA
EST: TTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAG ACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATA
genomic: TTCCACTAGGCCATCCTATATTTGATGTTATCGAGTCAACAGATCCAGAGgtaggtggat ... actcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATA
agcgccaataaatgatctatgctggaagctgatgtaatttgtattactcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAGAAGACAACTTTTGGCAGTTATATTCTGATTTTTTGCCAAGTGTTGATG
agctgat putative branch site (score: 4)
ttactctt putative PPT
atgtaatttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttcaaaaactcaatcatctgtcttttcttcaacaaatattaaagcgccaataaatgatctatgctggaagctgatgtaatttgtattactcttgcagACAGATTGGGATCTAAGATTAGCATGTCTTCTTCTATATGCATTTGATATAGAAGACAACTTTTGGCAGTTATATTCTGATTTTTTGCCAAGTGTTGATG
- - - - -aactcaa
- - - - - - - - - - - - - - - - caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg