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gtaaaacggatcatttccttctcttgtcttcttatgcaacatgctctgcatagaggaaaaaaatctttacggctgccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGCATCACAACCCAAACATTATTGAATCATGCATGGACGTCTGCAGCTACTC
species | Zea mays |
transcript | GRMZM5G801369_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAG CTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGCEST: gi|149075694|gb|EE164238.2|EE164238
genomic: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAGgtaaaacgga ... ccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
EST: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAG CTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGCEST: gi|149062889|gb|EE157609.2|EE157609
genomic: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAGgtaaaacgga ... ccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
EST: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAG CTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGCEST: gi|71301944|gb|DR787048.1|DR787048
genomic: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAGgtaaaacgga ... ccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
EST: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAG CTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
genomic: TGCTAGGGTACTTGTTTGGCATTTCCTTCCCTACCGTTAATATAACAAAGgtaaaacgga ... ccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGC
cttatgcaacatgctctgcatagaggaaaaaaatctttacggctgccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGCATCACAACCCAAACATTATTGAATCATGCATGGACGTCTGCAGCTACTC
ctgcctttt CT-rich tract
aaaaaaatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacggatcatttccttctcttgtcttcttatgcaacatgctctgcatagaggaaaaaaatctttacggctgccttttgcagCTTCACTTCCCTTCCAGCATTATCTCCTATATCGAGGACAGAAACTCTGGCATCACAACCCAAACATTATTGAATCATGCATGGACGTCTGCAGCTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT