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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatagatttccttatattcttcatattatttactcatgtagaaccaggcaggcacaccatttaactgataatatgcacctgagctgtgcagTCGAGGTTGCAAGAAGAACATGAAAGGTGCATTCTGTATTTGGAAGCTAACACGAGGAAGCCACTGATCGCAACTACTGAAACACAATTGCTAGACCGTC

Basic information

species Zea mays
transcript GRMZM2G704093_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G704093_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 3'ss of exon 4
gtaaggatagatttccttatattcttcatattatttactcatgtagaaccaggcaggcacacc-atttaactgataatatg-cacctgagctgtgcagTCGAGGTTGCAAGAAGAACATGAAAGGTGCATTCTGTATTTGGAAGCTAACACGAGGAAGCCACTGATCGCAACTACTGAAACACAATTGCTAGACCGTC
|||  |||| |  || |    |||  | |    |||  |||   | ||     |||| | ||  ||  || || |  |||  ||| |||  | | ||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| || ||  || |||| ||||  |||||  |  | || |
gtattgataaacctcttgtatttccccttgcattttgttcacacaaaatt---caggtatacttatgcaattggtggtatttcacatgaattattcagACAAGGTTGCAAGAAGAACATGAAAGGTGTATTCTATATTTGGAAGCTAACACTAGGAAGCCGCTTATAACAGCTACAGAAAAGCAATTATTGCAGCGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353844|gb|CD438201.1|CD438201
EST:     ATCTGATATTCCAGACTACCTGAAGCATGTAGAG                         TCGAGGTTGCAAGAAGAACATGAAAGGTGCTTTCTGTATTTGGAAGCTAAC
genomic: ATCTGATATTCCAGACTACCTGAAGCATGTAGAGgtaaggatag ... agctgtgcagTCGAGGTTGCAAGAAGAACATGAAAGGTGCATTCTGTATTTGGAAGCTAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagaaccaggcaggcacaccatttaactgataatatgcacctgagctgtgcagTCGAGGTTGCAAGAAGAACATGAAAGGTGCATTCTGTATTTGGAAGCTAACACGAGGAAGCCACTGATCGCAACTACTGAAACACAATTGCTAGACCGTC
                          aactgat  putative branch site (score: 3)
                      atttaactgataatat  TA-rich tract