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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataataactggcataggacctgttcatggacggttatgtatgtttgtggccaatgacccaaccactaagggtggcacatactatcctcttactgtcaagaagcatctgcgagcacagGAAATAGCTTCGGAGTGCAAACTGCCTTGCATATATCTCGTTGACAGCGGAGGTGCTAATCTCCCCAG

Basic information

species Zea mays
transcript GRMZM2G702490_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G702490_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g32850.2 (Oryza sativa), 3'ss of exon 1
---gtataataactggcataggacctgttcatggacggtta--tgtatgtttgtggccaatgacccaaccactaagggtggcacatactatcctcttactgtcaagaagcatctgcgagcacagGAAA----TAGCTTCGGAGTGCAAACTGCCTTGCATATATCTCGTTGACAG-CGGAGGTGCTAATCTCC--CCAG--
    |  |||| |||  |      |      | |||    |  ||| ||| |    | |      || |   | | |||  |   |  |||     ||  |     | |     | |   |   | ||    || | || | | ||| | |  || |||||   |  ||  |  | ||    ||    | |    |||   
ttgtttcaatatctgataagatggcccacattagacttacagttgtctgtcttgttctagaatatcagctgttgatggtacctttt-ttatttcaataaagCTTGCAGGATCTGGTGTTTATGAGGAAGCATTACCATCAGGGGGCATAATAACTGGCATAGGACCTGTCCATGGACGATTATGTATGTTTGTGGCCAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149110095|gb|EE293910.2|EE293910
EST:     CTTGCAGGCTCAGATGTTTATGATGAAGCATTACCATCAGCAG                         GAAATAGCTTCGGAGTGCAAACTGCCTTGCATATATCTCGTTGACAGCGGA
genomic: CTTGCAGGCTCAGATGTTTATGATGAAGCATTACCATCAGCAGgtataataac ... gcgagcacagGAAATAGCTTCGGAGTGCAAACTGCCTTGCATATATCTCGTTGACAGCGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactaagggtggcacatactatcctcttactgtcaagaagcatctgcgagcacagGAAATAGCTTCGGAGTGCAAACTGCCTTGCATATATCTCGTTGACAGCGGAGGTGCTAATCTCCCCAG
                       ctcttac  putative branch site (score: 3)
               atactat  TA-rich tract