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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgtagcattcactgctagtggaccagaaagacttgttctagtcaatcttggttgacattttcttttgtgtttagGTGGAGTACAGGTCAACATTATGTGATACCGCAGAACTACAATTCTCTATTGAG

Basic information

species Zea mays
transcript GRMZM2G588223_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G588223_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g42600.1 (Oryza sativa), 3'ss of exon 10
gtactgtgtagcattcactgctagtggaccagaaagacttgttctagtcaatcttggttgacattttcttttgtgtttagGTGGAGTACAGGTCAACATTATGTGATACCGCAGAACTACAATTCTCTATTGAG
||| | |  | ||||||   |    | |||| | |       || |||  ||  |  |||||| |||   |||| |||||||||||||||||||| || |||||||||| || ||  |||| ||||| || |||
gtagttttgaacattcaggtc----gcaccatacaa------tccagtttataatcattgacacttttcattgtttttagGTGGAGTACAGGTCAGCACTATGTGATACTGCGGATTTACAGTTCTCAATCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31359957|gb|CD444314.1|CD444314
EST:     GGACCTCTGCTGGCGTATTAGAGGGCATTGCTGTGAAATGCGGATCTAAG                         GTGGAGTACAGGTCAACATTATGTGATACCGCAGAACTACAATTCTCTATT
genomic: GGACCTCTGCTGGCGTATTAGAGGGCATTGCTGTGAAATGCGGATCTAAGgtactgtgta ... ttgtgtttagGTGGAGTACAGGTCAACATTATGTGATACCGCAGAACTACAATTCTCTATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaccagaaagacttgttctagtcaatcttggttgacattttcttttgtgtttagGTGGAGTACAGGTCAACATTATGTGATACCGCAGAACTACAATTCTCTATTGAG
                              ggttgac  putative branch site (score: 4)
                                      ttttcttttgtgttt  CT-rich tract
                                     attttctttt  TA-rich tract