1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtagaagatctatgtcttggctggcaacaattacttatgtacagactacaaaatgtaacattgatatgacgatatgttaactgagaaatttacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTCCACCAG
species | Zea mays |
transcript | GRMZM2G520535_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|31360260|gb|CD444617.1|CD444617
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211451195|gb|FL002405.1|FL002405
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211449078|gb|FL002398.1|FL002398
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211449073|gb|FL002393.1|FL002393
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|7958433|gb|AW862735.1|AW862735
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211449076|gb|FL002396.1|FL002396
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACAEST: gi|211446954|gb|FL002385.1|FL002385
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACA
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211451194|gb|FL002404.1|FL002404
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCYCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211449074|gb|FL002394.1|FL002394
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATCAGAGGAGAGGATATCTGCTTGEST: gi|211039974|gb|FL073405.1|FL073405
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAAT-AGAGGAGAGGATATCTGCTTG
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|149014492|gb|EE044118.2|EE044118
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211446952|gb|FL002383.1|FL002383
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAEST: gi|7844161|gb|AW787383.1|AW787383
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTA
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211446953|gb|FL002384.1|FL002384
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|71320428|gb|DR796958.1|DR796958
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211446956|gb|FL002387.1|FL002387
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211449082|gb|FL002402.1|FL002402
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTWACGAGAATAGAGGAGAAGGATATCTGCTTGGACATTTCTEST: gi|211039976|gb|FL073407.1|FL073407
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGA-GGATATCTGCTTGGACATTTCT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAAAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|7844162|gb|AW787384.1|AW787384
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|148951226|gb|EC896920.2|EC896920
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211446955|gb|FL002386.1|FL002386
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAAAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|76019346|gb|DT946516.1|DT946516
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211449068|gb|FL002388.1|FL002388
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAAAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|71328190|gb|DR800733.1|DR800733
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211449072|gb|FL002392.1|FL002392
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|71442480|gb|DR823530.1|DR823530
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|31353117|gb|CD437474.1|CD437474
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|78180250|gb|DV550623.1|DV550623
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211039973|gb|FL073404.1|FL073404
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTYEST: gi|211039977|gb|FL073408.1|FL073408
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAAAATAAAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211039972|gb|FL073403.1|FL073403
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|89250537|gb|DY622323.1|DY622323
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|76287083|gb|DV026651.1|DV026651
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|211449075|gb|FL002395.1|FL002395
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTEST: gi|74236045|gb|DT643959.1|DT643959
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
EST: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAG GATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
genomic: TCCAGAGTGAGGTGCGCACCAGCTCCGGCATGTTCCTCGAGAGGAAGCAGgtgagcagac ... tacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTT
ctacaaaatgtaacattgatatgacgatatgttaactgagaaatttacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTCCACCAG
tgttaac putative branch site (score: 119)
tttactt putative PPT
aaatttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaagatctatgtcttggctggcaacaattacttatgtacagactacaaaatgtaacattgatatgacgatatgttaactgagaaatttacttgtcagGATGAAGTAGTAACGAGAATAGAGGAGAGGATATCTGCTTGGACATTTCTTCCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - -tggctgg
- - - - - - - - - - - - caacaat
- - - - - - - - - - - - - - - - - - - - - - -ctacaaa