1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgtctatcagttttttggactatctcgtatctaactgttactatgaattctattgcacactgaattacgtctaatgaagtctctatttatttctcgacagGTTTCGTACAATTTATTGGCTAAGTATCTCCCGTGACCCATTCGGTTGCTAACTCTTTTAAACGTGTGGTGGTCATTGTGTCATCCGTTCTCTTCTTTAG
species | Zea mays |
transcript | GRMZM2G512279_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
aattctattgcacactgaattacgtctaatgaagtctctatttatttctcgacagGTTTCGTACAATTTATTGGCTAAGTATCTCCCGTGACCCATTCGGTTGCTAACTCTTTTAAACGTGTGGTGGTCATTGTGTCATCCGTTCTCTTCTTTAG
gtctaat putative branch site (score: 85)
tctctatttatttctc putative PPT
tctatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctatcagttttttggactatctcgtatctaactgttactatgaattctattgcacactgaattacgtctaatgaagtctctatttatttctcgacagGTTTCGTACAATTTATTGGCTAAGTATCTCCCGTGACCCATTCGGTTGCTAACTCTTTTAAACGTGTGGTGGTCATTGTGTCATCCGTTCTCTTCTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - - - -ctattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactgaa