1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...caatgaactcttatctatgcagaacaaatgggaacgtttcttagcttcaaactaaacagacctgtaaagtttaatcattctgcaaattaatgcatttcagGCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTGGACTAATGTATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGA
species | Zea mays |
transcript | GRMZM2G488458_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAG GCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTGEST: gi|32941544|gb|CF046363.1|CF046363
genomic: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAGgtgaaatcgt ... tgcatttcagGCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTG
EST: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAG GCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTGEST: gi|211402516|gb|FL246548.1|FL246548
genomic: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAGgtgaaatcgt ... tgcatttcagGCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTG
EST: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAG GCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTGEST: gi|211402517|gb|FL246549.1|FL246549
genomic: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAGgtgaaatcgt ... tgcatttcagGCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTG
EST: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAG GCTTCCAGGTCAAAGTAGTGACACEST: gi|26558346|gb|CA830581.1|CA830581
genomic: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAGgtgaaatcgt ... tgcatttcagGCTTCCAGGTCAAAGTAGTGACAC
EST: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAG GCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTGEST: gi|22546220|gb|BU098516.1|BU098516
genomic: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAGgtgaaatcgt ... tgcatttcagGCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTG
EST: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAG GCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTGEST: gi|87155227|gb|DY400016.1|DY400016
genomic: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAGgtgaaatcgt ... tgcatttcagGCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTG
EST: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAG GCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTG
genomic: TCAGGAAGCCAACCGTGCCCCTGAGGATTTCCCAAACTTCATCAGAGAAGgtgaaatcgt ... tgcatttcagGCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTG
ttcaaactaaacagacctgtaaagtttaatcattctgcaaattaatgcatttcagGCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTGGACTAATGTATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGA
taaagtttaatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgaactcttatctatgcagaacaaatgggaacgtttcttagcttcaaactaaacagacctgtaaagtttaatcattctgcaaattaatgcatttcagGCTTCCAGGTCAAAGTAGTGACACCGGACAACTATATTACACGGGCCTCTGGACTAATGTATGAGGACATTAAAGTCGGTACAGGCGACTCTCCAAAGGA
- - - - - - - ctatgca
- - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - - agcttca
- - - - - - - - - - - - - - - - - - - - - - - - -aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctgta