1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttggactgaaagcattgtattttccctatcgggtacatgatatgtggtgcctttacttgtggaatcttaggcttatgactgttttctcatcctttacagCTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCCTAGGATCATTTCGGAGGTTGCGAAGTTCAAACCTGACATTATTCATGCG
species | Zea mays |
transcript | GRMZM2G477503_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGGAGTTCCCCAAGAGTTCCATGGCGCCAAGGTTATAGGTTCATGGAG CTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCCEST: gi|211256442|gb|FL155188.1|FL155188
genomic: GAGGGAGTTCCCCAAGAGTTCCATGGCGCCAAGGTTATAGGTTCATGGAGgtaagtcttc ... tcctttacagCTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCC
EST: GAGGGAGTTCCCCAAGAGTTCCATGGCGCCAAGGTTATAGGTTCATGGAG CTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCCEST: gi|211256441|gb|FL155187.1|FL155187
genomic: GAGGGAGTTCCCCAAGAGTTCCATGGCGCCAAGGTTATAGGTTCATGGAGgtaagtcttc ... tcctttacagCTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCC
EST: GAGGGAGTTCCCCAAGAGTTCCATGGCGCCAAGGTTATAGGTTCATGGAG CTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCCEST: gi|211249735|gb|FL399211.1|FL399211
genomic: GAGGGAGTTCCCCAAGAGTTCCATGGCGCCAAGGTTATAGGTTCATGGAGgtaagtcttc ... tcctttacagCTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCC
EST: GAGGGAGTTCCCCAAGAGTTCCATGGCGCCAAGGTTATAGGTTCATGGAG CTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCCEST: gi|211319627|gb|FL415398.1|FL415398
genomic: GAGGGAGTTCCCCAAGAGTTCCATGGCGCCAAGGTTATAGGTTCATGGAGgtaagtcttc ... tcctttacagCTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCC
EST: GAGGGAGTTCCCCAAGAGTTCCATGGCGCCAAGGTTATAGGTTCATGGAG CTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCC
genomic: GAGGGAGTTCCCCAAGAGTTCCATGGCGCCAAGGTTATAGGTTCATGGAGgtaagtcttc ... tcctttacagCTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCC
tggtgcctttacttgtggaatcttaggcttatgactgttttctcatcctttacagCTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCCTAGGATCATTTCGGAGGTTGCGAAGTTCAAACCTGACATTATTCATGCG
ctgttttctcatcctt CT-rich tract
tttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggactgaaagcattgtattttccctatcgggtacatgatatgtggtgcctttacttgtggaatcttaggcttatgactgttttctcatcctttacagCTTCCCATGCCCCATGTATGGAAAAGTACCTCTTTCGCTGGCACTCAGTCCTAGGATCATTTCGGAGGTTGCGAAGTTCAAACCTGACATTATTCATGCG
- tggactg
- - - - - - - - tgtattt
- - - - - - - - - - - - - - - - -gtacatg
- - - - - - - - - - - - - - - - - - - - - - -tggtgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg