1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaataaaaccaattttaaatctatttcttattgacattttaggtcaaaatgtattatttttttattgtcatgtggtggaaactctggttacgaaattctcgttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATCATCCCAGGGAAAGTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGAT
species | Zea mays |
transcript | GRMZM2G475017_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAG TACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|78116119|gb|DV534507.1|DV534507
genomic: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAGgtaaataaaa ... ttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGAT
EST: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAG TACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|91876225|gb|EB406182.1|EB406182
genomic: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAGgtaaataaaa ... ttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGAT
EST: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAG TACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|94474028|gb|EB702986.1|EB702986
genomic: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAGgtaaataaaa ... ttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGAT
EST: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAG TACTATGCAAAGAATGGCACATGCAAATTTGGTTCCCATTGCCAGTTTGATEST: gi|76921023|gb|DV168420.1|DV168420
genomic: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAGgtaaataaaa ... ttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGAT
EST: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAG TACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|71775279|gb|DR973157.1|DR973157
genomic: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAGgtaaataaaa ... ttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGAT
EST: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAG TACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|38687417|gb|CK144448.1|CK144448
genomic: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAGgtaaataaaa ... ttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGAT
EST: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAG TACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|76289471|gb|DV029039.1|DV029039
genomic: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAGgtaaataaaa ... ttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGAT
EST: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAG TACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATEST: gi|50338849|gb|CO533975.1|CO533975
genomic: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAGgtaaataaaa ... ttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGAT
EST: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAG TACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGAT
genomic: AGACCACAGGTATGGAGTACCCAGAGCGCCCTGGACAGCCACTCTGTGAGgtaaataaaa ... ttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGAT
tttttttattgtcatgtggtggaaactctggttacgaaattctcgttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATCATCCCAGGGAAAGTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGAT
ttctcgttattttc CT-rich tract
ttattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataaaaccaattttaaatctatttcttattgacattttaggtcaaaatgtattatttttttattgtcatgtggtggaaactctggttacgaaattctcgttattttcagTACTATGCAAAGAATGGCACATGCAAATTTGGTTCCAATTGCAAGTTTGATCATCCCAGGGAAAGTGGTTTTGTACCTGTCGCTTTAAACAACAGTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA