1 5' 3' | 2 5' 3' | 3 5' 3' |
gttgtaatctaccaacactatgccaattcactctgcccaaacctttgagcatgccgcactgcctttctaattcactttttttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGCTTTTCTCCCCCACAAGCAGAAGGCTCGAAGGAAGTTGGCAAGGAGGAGG
species | Zea mays |
transcript | GRMZM2G474769_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAG GGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGCEST: gi|78180850|gb|DV551223.1|DV551223
genomic: TTAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAGgttgtaatct ... ttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGC
EST: TTAGAAGCAGTGGAAGCACAAGTGATTCATGGAAGGAAGTTTCCGAAGAG GGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGCEST: gi|8577344|gb|BE129981.1|BE129981
genomic: TTAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAGgttgtaatct ... ttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGC
EST: TTAGAAGCAGTGGAAGCACAAGTGATTCATGGAAGGAAGTTTCCGAAGAG GGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGCEST: gi|60358102|gb|DN225075.1|DN225075
genomic: TTAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAGgttgtaatct ... ttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGC
EST: TAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAG GGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGC
genomic: TAGAAGCAGTGGAAGCACGAGTGATTCATGGAAGGAAGTTTCCGAAGAGgttgtaatct ... ttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGC
cccaaacctttgagcatgccgcactgcctttctaattcactttttttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGCTTTTCTCCCCCACAAGCAGAAGGCTCGAAGGAAGTTGGCAAGGAGGAGG
ttctaat putative branch site (score: 2)
cctttctaattcactt CT-rich tract
taattcacttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtaatctaccaacactatgccaattcactctgcccaaacctttgagcatgccgcactgcctttctaattcactttttttgttggcagGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAAAAGCTTCCGCAAAGCTTTTCTCCCCCACAAGCAGAAGGCTCGAAGGAAGTTGGCAAGGAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG