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gtatggtgcttggtcatgggagctcttctttgtacgtgcctaacatttgttgatgtaacatgcactgaattaactttgacatgtagGCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAGGATCGGCGTTACAAGAACCGGGAGCTGCAACTTATGCGTGCCATGGAGC
species | Zea mays |
transcript | GRMZM2G472625_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACATGGCAGAACGTGTCGTGGGTACGGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAGEST: gi|20811237|gb|BQ295715.1|BQ295715
genomic: ACATGGCAGAACGTGTCGTGGGTACGGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tgacatgtagGCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAG
EST: ACATGGCAGAACGTGTCG-GGGTACGGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAGEST: gi|211127223|gb|FL138012.1|FL138012
genomic: ACATGGCAGAACGTGTCGTGGGTACGGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tgacatgtagGCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAG
EST: ACATGGCAGAACGTGTCGTGGGTACGGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAGEST: gi|211126301|gb|FL138002.1|FL138002
genomic: ACATGGCAGAACGTGTCGTGGGTACGGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tgacatgtagGCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAG
EST: ACATGGCAGAACGTGTCGTGGGTACGGGCTCATTTGGGATCGTCTTCCAG GCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAGEST: gi|9825069|gb|BE575271.1|BE575271
genomic: ACATGGCAGAACGTGTCGTGGGTACGGGCTCATTTGGGATCGTCTTCCAGgtatggtgct ... tgacatgtagGCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAG
EST: TCGTCTTCCAG GCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAG
genomic: TCGTCTTCCAGgtatggtgct ... tgacatgtagGCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAG
gtacgtgcctaacatttgttgatgtaacatgcactgaattaactttgacatgtagGCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAGGATCGGCGTTACAAGAACCGGGAGCTGCAACTTATGCGTGCCATGGAGC
aattaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtgcttggtcatgggagctcttctttgtacgtgcctaacatttgttgatgtaacatgcactgaattaactttgacatgtagGCTAAGTGTTTGGAGACTGGAGAGACCTTCGCCATTAAGAAGGTGCTGCAGGATCGGCGTTACAAGAACCGGGAGCTGCAACTTATGCGTGCCATGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA